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Query: PF04286.12; B2JUN1_PARP8/44-418; Protein of unknown function (DUF445 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AEAAMVGALADWFAVVALFRRVPIPGVAAHTAIIPQNKDKIADNLAIFVREKFLDESSIVGLIRKHNPAQSIANWLCVDANTRRLGDYVLKLTGGILDLLDDARIQSFIKDALDAMLDKIDLSKATGAILDTLTRDGRHQELLDEGIEHLMALLREPGVRTFIAEQIVDWFKRQYPTLEKIMPSEWLGESGANVVADTVNNMLLRVSEDRSHKLRQKFDEAAARLVVKLKSDPAFLEKGEEIKRYVKESENLALYVRDLWAQLRDWLRRDLACDDSVLHSKIGAMGQWIGRELAQDPSLRRSLNDHMEEAARAMAPDFAGYLTRHISDTVKNWDSRDMSQQIELNIGKDLQYIRINGTLVGGCIGLLLYVSSQLFLast
1 -98.200PF04286.12; B2JUN1_PARP8/44-418; Protein of unknown function (DUF445 topsan)  ali  100  1AEAAMVGALADWFAVVALFRRVPIPGVAAHTAIIPQNKDKIADNLAIFVREKFLDESSIVGLIRKHNPAQSIANWLCVDANTRRLGDYVLKLTGGILDLLDDARIQSFIKDALDAMLDKIDLSKATGAILDTLTRDGRHQELLDEGIEHLMALLREPGVRTFIAEQIVDWFKRQYPTLEKIMPSEWLGESGANVVADTVNNMLLRVSEDRSHKLRQKFDEAAARLVVKLKSDPAFLEKGEEIKRYVKESENLALYVRDLWAQLRDWLRRDLACDDSVLHSKIGAMGQWIGRELAQDPSLRRSLNDHMEEAARAMAPDFAGYLTRHISDTVKNWDSRDMSQQIELNIGKDLQYIRINGTLVGGCIGLLLYVSSQLF 375
2 -6.310PF04210.13; Q12VV0_METBU/7-70; Tetrahydromethanopterin S-methyltransferase, subunit G  ali follow..  18  15.....................................................................................................................................................................................................................................................................................................................................VLEKLNLIDEKEIAQRIGKKLGRDI------GIMYGAVAGILIFLIYISL 64
3 -6.290PF15400.6; F1SKL3_PIG/133-268; Testis-expressed sequence 33 protein family  ali follow..  7  1...............................SSIPNN---IRHKFGSNVVDQLVSEEQVQRALGEAR---------EGPKRASSWPSRIQSPADVTSIFSDYYDLGYHMRSNFFQGAPQETKSLMKASYTPEVIEKSVREHWHGRKTDDLGRWHQKNAMNMNLQKALDEKEKSKNKN...................................................................................................................................................................................................... 136
4 -6.020PF04888.12; C5B9R1_EDWI9/106-478; Secretion system effector C (SseC) like family  ali follow..  8  58.KAGIFSAIVDWIIAEVVSGIGKL------IGDFAGGAMDVAAGCSGLVKA---HADKYQAIADVAGMVVDLVSVGRGVMAGKSIAKAAETAMEGAAGEALHNAVTEGSEEAIKAAAKEI-GKEVAGQVSEEVIRNLAEQSGRFLGQGPLLKALSKEAIEKMVTQAVETAVKNALKSGGDISLEALTKQVVKEVQRAVIKAIIGACITSVANNAKSTTRATLQGT----GIYQGVITKERAELQKVIQQLMNESSFLQFMLDEFEKVKKNAQENISNLMDGAGKALSSAADAQQKSGAMLSSI........................................................................ 370
5 -5.990PF04196.12; RDRP_RSVT/1066-1804; Bunyavirus RNA dependent RNA polymerase  ali follow..  10  355......GGLREIYVLNIFER------------IMQKTVEDFSRAILECCPSETMTSPKNKFRIPELHNMEARKTISTSDDASKWNQGHYVSKFMCMLLRLTPTYYHGFLVQALQLWHHKK----FLGDQLLQLFNQNAMLNTMDTTLMKVFQAYKGEIQVPWMKAGRSYI---ETETGMMQGILHYTSSLFHAIFLDQLAEECRRDINRAIKTINNKENEKVSCIVNNMESSDDSSFIISPNFKENEAAQLYLLCVVNSWFRKKEKLGTYLGIYKSPKSTTQTLFVMEFNSEFFFSGDVHRPTFRWVNAAVSGIQEELSNTLKDVIEGRMLGSSASSVWPAYETLLKN-LGFFLMDNPKCAGLLGFNYNV..... 739
6 -5.860PF15783.5; L5JZ88_PTEAL/5815-6683; Fibrous sheath-interacting protein 2  ali follow..  8  5.................................IPAIDKTLVNKVVHSSVCSILKEYRSQDSICK--LARRLTSAVINEIFQHQLNLIYCEEVPSACLPLESKDVVKKIQKVAHTSSKECQLESVISALLSKIFSDFLQMKLLSTVTTEISK-NDDEIIQLVVHSIYNNLLLQFGSQEIIQNCVASGCRILSETIVDLVLREVSGFSGELTPHQCAEVDSVVENILKDVIQTTDAPQPQPS-HAHMLPYNIIEEIAVKFLSKLLFTFPKVDKEKTKSQETEMQNIISKILNSIQEFLADNETIEKVVNSVYSSVLKQSGSHTS--IFKDLMG-KSNVLSDIIGFLMVKEISNSEFQPQVEE.............. 404
7 -5.640PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  9  2AIVRLIRGLNS-VALTETLRQLY----PNIHGLVKSGQEKRDYLLGRVFGYKAISSILVQPNAPEECWANVLEQLFKLAREKPWLREECGMILCEAVKAIAQEKGQQRLVKQIVDGLCSDGLAKTPEGVSVWITVQREIPDMELPQGVWHKEDPLSTKDRQTLANVMKENFTSDGANETGKKVKGSSQTTALSFSWDVVISAFFQRHGDDPSRFANFWADIVDNNLFSASSSPEQKSKGLQLFTRMLGNAPKWALPSIFSPNLMRCLINQRNDSERFLHNAAKAPLDEMRTRSKKEPETAAPF---LENLITKHGSLHFDQINKTVEGVLGHANDVALEQIVP................................ 375
8 -5.510PF07539.12; E5AF73_LEPMJ/886-1482; Down-regulated in metastasis  ali follow..  9  242.............ILAKLFTNSPDFDWGLYMQAI---NELVEPRLEQLPIETAQSVSGILRLFYNKDVLIKAIDCLDVPSAKDVVRCFVLEEIIRNIVFLVTNQESKLLQNRVQTEIIQQYSNVMLSRVGNLLRRSPSKDVLESGVVADMAPYVTGSVEARSMIEIATFLLRQPAKR---------VNSRTKLGLLKILHEFIKRCDQQNLHELFSTIYDAICPMFAFV-HERTARNLLCDIVQDLAGTQEDLVSIAKLCYALNSFTKGRLDEPDFQCRSLAFDEINEHNYRLYSMKQWRPLAYNMLFFIKDNDELSIRVNASLSLRRLIEVSNSDEFKNFISTAVLPGIQ........................ 590
9 -5.510PF16940.5; I1I508_BRADI/88-659; Chloroplast envelope transporter  ali follow..  9  212...............................GITDSQIDIAMRDNAKNLYTSQLKSIEVRRAQLAYKLSDEIAADMFREHAKKLIQENISSALDILKSRTKAANSPTQVIEEVKIVLAAGDLKILYRAYATEVLSDGPLDNEKLIPLNELRNILGKREAEAIISDVKSQVYRKRLAK---CFNTELAAAPSKASFLQNLCEELEFDPELASKMHEDIYRQKLQQFVADGELSKDETEALMAFQVRLIPQETVDAAHTDICGQLFEKVVKEAIVSVDGYNADRRDAVRKAAQGLNLKKEAAMTIFSKAVR----------KLFLNYIQRAKAAGNRIEQAKELK-------KLISFNTVVVSELL........... 572
10 -5.500PF10667.9; B4E8G7_BURCJ/1-248; Protein of unknown function (DUF2486 topsan)  ali follow..  11  196.......................................................................................................................................................................................................................................................................................................REAIEARCRDALHEHSAWLVGQVTREVALALETEVMDW--------VRDAVDEEIA--RRAG.................. 248
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.