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Query: PF04388.12; F7E2N6_XENTR/7-705; Hamartin protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VWDHLYLLESSDLQQLDQIHTLIRDHLSADRSPILVNNLVDHYVETGSEQAMLILSMVQEPHDKHLLDKINEYLVKAASRLPTLTLLGHVIRRQPSWKHKLSQAPVLQSLLKCLKVDNDVVVLTTGVLVLITVLPMIPQSGKQHLYEFFDIFGRLATWCLKNPGRVAKICLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMKENLETFEEIVKPMMEHVRIHPELVTGSKDHELDPSRWRRLETHDIVVECAKISLDPSEASYEEGYSPLSNRLRQRQHDTTSSPYTEIGCNYGSNASTPFSTPRMCAHSASIHSGGIELLQDSIWSPSTICGMTTPPNSPANVLADAAHSSSRPHSKVLYTPVGGKITPLGTPATSPPPPSNSEECTPAAGASLTLTPHKKNESFDPGRSLVNRQLLSKGEKSADESPKTQKTVYLSELPDIIGDLAADHNSTEEEQETRAAICQELSQITTADPEPTVLRGGFDSPFSLRCDSQPSSQKKFPSYGVGHIPEHSAPNKLHYSAPHDSSKQAFTPIEPPNGTENAADSGKPPSNNSLPSAVDIFTPQVQRNVSCFSLPPYDHLFELALPKTANMFVCRKNEELCRRGKGSLEEGEEGAFSVSPAEVLDRLIQLGADAHTKELSKLSLPSKAADWTHFGGSPPTDEIHVLRNQLVLLHNQLLYERFKRQQHAQRNRRLLast
1 -115.000PF04388.12; F7E2N6_XENTR/7-705; Hamartin protein  ali  100  1VWDHLYLLESSDLQQLDQIHTLIRDHLSADRSPILVNNLVDHYVETGSEQAMLILSMVQEPHDKHLLDKINEYLVKAASRLPTLTLLGHVIRRQPSWKHKLSQAPVLQSLLKCLKVDNDVVVLTTGVLVLITVLPMIPQSGKQHLYEFFDIFGRLATWCLKNPGRVAKICLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMKENLETFEEIVKPMMEHVRIHPELVTGSKDHELDPSRWRRLETHDIVVECAKISLDPSEASYEEGYSPLSNRLRQRQHDTTSSPYTEIGCNYGSNASTPFSTPRMCAHSASIHSGGIELLQDSIWSPSTICGMTTPPNSPANVLADAAHSSSRPHSKVLYTPVGGKITPLGTPATSPPPPSNSEECTPAAGASLTLTPHKKNESFDPGRSLVNRQLLSKGEKSADESPKTQKTVYLSELPDIIGDLAADHNSTEEEQETRAAICQELSQITTADPEPTVLRGGFDSPFSLRCDSQPSSQKKFPSYGVGHIPEHSAPNKLHYSAPHDSSKQAFTPIEPPNGTENAADSGKPPSNNSLPSAVDIFTPQVQRNVSCFSLPPYDHLFELALPKTANMFVCRKNEELCRRGKGSLEEGEEGAFSVSPAEVLDRLIQLGADAHTKELSKLSLPSKAADWTHFGGSPPTDEIHVLRNQLVLLHNQLLYERFKRQQHAQRNRRL 699
2 -11.500PF03326.13; BRLF1_ALHV1/105-619; Herpesvirus transcription activation factor (transactivator)  ali follow..  21....................................................................................................TASSQIIRFFLERVIRHTDKWFLLAPCNGL-----ILPQELAKEMYVLLS--ARGKALNQGRMFSGGRQNMMNAAKKVLTVYSSL-GEISPEVKAYMAYIFPVPD----IEQVFQPLFKLEQ--PEVLLEASEPQSTLAY--CPDISSLLRDSSSTQENTDEESGPCCSKTLSPGVPQPQSEYDPSPTSPPDSDTESCDSQVRPESTDSDTHAEDDDVPEAPQAASQTQPTTTQETQSCCSVYNPATTQTGFYYNQQSSDNFASRIDASATSTSYGYPGPVTNHGFSTSVFSHTVPTTATGQQQLHQNMYGGGQQTTTYGSYVGGYSDANGQSVGASTSYYTSKPATSRSSTALQWTTLFPPASSSASSSQVSDYFSGFPYFPGSSTVPQAFEPLAPSTPSLLDELLDRDSGLVSQQQAPAPPQNDQGGPPQYVPVAQEQQQSSTDPLSDEMRRIFEFFDSVNPVTRP................................................................................................................................... 515
3 -10.300PF06933.11; O44418_CHIPA/1-756; Special lobe-specific silk protein SSP160  ali follow..  47.....................................................................................................................................................................................................................................................VFDVKSFTSLSTPTCNSTVPSFATRVGGGRFSGIITASFNMIAMISANVQAIQSGSGSTSGSSSSSTTSTSNSTTTTSNSTTTTTNSTTSSNSTSSGLTSSASVVSLIDTIAWVYQDSSVGIAYLMVSILALFYGQSVSAPPYPDLGIPALPANCSGPGVPQSVQIRAAIAYVNITIYFINMTGQQFEDLQGPVATDCGCPNTTSVAPLVLEWEAILAALQALANSTASANSTTSSNSTTTTTTNSTSTTTTNSTTTTNSTSSSNSSTIAGCIDISANFTIALQSLQALLLQESTCAPALAANAKKSGVRDMSPCKPGKTASGCAKSGEKKVK......................................................................................................................... 379
4 -9.970PF14500.6; R4X873_TAPDE/43-304; Dos2-interacting transcription regulator of RNA-Pol-II  ali follow..  12  1VSDLGDYLIEEDVSLRSKAMRLLEGVLGALPRDNLSGQHVTVMVQFFCDRLSDSLSRMRFFAPEDADKVASFVIGRQRTRFYLYTLYERLMSTHRKALRTL-DSQFVSGFMSLISGEKDPRNLMLAFSIMRIILAEFN--IDDSIENIFDSVY--------------------------------Y--FPITFRPQPNEPSTITTE-DLKMRLRQCLSATPKFAPFLIPALIEKLNAVAVSVKKDTLLTLVACCD............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 238
5 -9.770PF16072.5; B4LSP3_DROVI/260-545; Domain of unknown function (DUF4813 topsan)  ali follow..  1............................................................................................................................................................................................................................................................................................ALPAGATYHPSGYAPAGASYHPAGQIPPGASYYPSGGVPHGATYYPQAPVAAVPAGATYLPAGAGLPPGATYYPQAPKSSSGLGLGTGLVAGALGGAILGHVLTPTQTRVVEHAPMSGGYGGGGGGGSNGGGEDKIIIINNGPPGSVTTTDAGSGTTVINAGGAQPAAPAAPAYQPAPAGAPAAAPAAAPAPVPSAPQTPLAPLTPSAAEGAIAATAAGAGLANAAAPAAAAPPPVDPNAPAAAAAPPAPGGIICVPVRVPEPDPKDPTKTIEVEKIACYPAPPP.................................................................................................................................. 285
6 -9.490PF17823.1; A0A0D9S1K3_CHLSB/1-439; Family of unknown function (DUF5585 topsan)  ali follow..  10...............................................................................................................................................................................................................................................................................IFSLSLSESHAASNDPRNFVPNKMWNGLVKRNASVETVDNKTSEHLTTAATSPVTLTKGTSAAHLNSTEVKTEHTSRTDLSEPATSGSAADGAASSAPTTAASSTTAASSAPTTVASSTTVASSAPMTAASSTTAASNAPTTAASSTTAASHAPTTAASSTPATLVPVTPISTSATATGHPSLSTALAQVPNSSTVPRTATLATLATHAQTVATTANTGSPMSTRPSPSKHMPSDTTASPAAPTRPQAQGLISQVSVDQPVVNTTPEPTPNLTVVTTTKAQAKEPTASPVPVPHTSRIPEVEATSPTTQP...................................................................................................................... 319
7 -9.450PF08549.10; E3Q6J3_COLGM/3-717; Fungal domain of unknown function (DUF1750 topsan)  ali follow..  11  289..............................................................................................................................................EWMEEIVS-----------SPYGLSQIVPPDLGLGLKGELASL-GIFPAQSADALTEPPQKPYIGRLEPGLADEFRKRVREH----LDATKAEMEKKNLASLKASSVFVDAKDIKNSVQEHGPEPWRIEGHYTDSEDNSGPWSQKHNKKVDEIVAQVEANLGRQIEVLHNVHRIQDGGFQEPAPEPVKEPSPVPPPASSLPPAAGADTGALGSRRPSQAGSTHSGVMVGDSDIDMGGTAAGLLDEMHTGFSANSTPLNNFPTPQTHMSALNSTAGTPANANAPSPAPVPPTIPEETETQASAGASAGAAEDVTMGNTGSTKNTPATAPDHGTGSGEWVVVPKGGTSPDPGAGAATSTGATEGDEPKAAAKIPSAAGTPVETQTPGGFSSLGDLDSAGDAMASYGASMADGLDMNMEMEDSA........................................................................................................................................ 702
8 -9.290PF05539.11; Q65305_TRTV/1-413; Pneumovirinae attachment membrane glycoprotein G  ali follow..  4.............................................................................................................................................................................................................................ELY--IIEGVSSSEIVLKQVLRRSQKILLGSALGLTLTSTIVISICISVEQVKLRQCVDTYWAENG---SLHPGQSTENTSTRGKTTTKDPRRLQATGAGKFESCGYVQVVDGDMHDRSYAVLGGVDCLGLLALCESGPICQGDTWSEDGNFCRCTFSSHGVSCCKKPKSKATTAQRNSKPANSKSTPPVHSDRASKEHNPSQGEQPRRGPTSSKTTIASTPSTEDTAKPTISKPKLTIRPSQRGPSGSTKAASSTPSHKTNTRGTSKTTDQRPRTGPTPERPRQTHSTATPPPTTPIHKGRAPTPKPTTDLKVNPREGSTSPTAIQKNPTTQSNLVDCTLSDPDEPQRICYQVGTYNPSQSGTCNIEVPKCST........................................................................................................ 375
9 -9.280PF11725.8; Q887C9_PSESM/17-1794; AvrE-family Type-III effector proteins (T3Es)  ali follow..  1...........................................................................................................................................................................................................................................................................................................................................TVTPDARAATDLQERAEQPRQRSSHSLSSVGKRALKSVGKLFQKSKAPQQKAATPPTAKNVKTPPPASNVATPRNKARESGFSNSSPQNTHSAPKSILRNHPNQASSSGAQTHEIHPEAAPRKNLRVRFDLPQDRLERSPSYLDSDNPMTDEEAVANATRQFRSPDSHLQGSDGTRISMLATDPDQPSSSGSKIGDSDGPIPPREPMLWRSNGGRFELKDEKLVRNSEPQGSIQLDAKGKPDFSTFNTPGLAPLLDSILATPKQTYLAHQSKDGVHGHLAQDDSSLAVIRSSNEALLIEGKKPPAVKMEREDGNIHIDTASGRKTQELPGKAHIAHITNVDGERMRVHEDRLYQ----SVYAKSDDAV 407
10 -9.210PF07010.12; G1SSM1_RABIT/1-264; Endomucin  ali follow..  12........................................................................................................................................................................................................................................................................................................................................LLSSLGGGQDNTDVINIATPRVSSSNSTTQTSVSTPNTTLAPNLEKSTRGTSPQGTTNSESAKTTLMSTAPSLTTVKSEGTTSNGVPKNESVTANDTVTNLPPISAVSTLKSSQHKTENQSSSKTTEIIVSTVNTSQPDGPFSETNTLPSAAVTTPAIILQSQGTEDGKNMSSSSTNPSYSSVILPVVIALIVVTLSVFVLVGLYRMCWKTDPGTPENGNDQPQSDKESVKLLTVKTISHESGEHSAQGKAK....................................................................................................................... 263
11 -9.050PF08580.10; V5HV84_BYSSN/491-1186; Yeast cortical protein KAR9  ali follow..  89VNVYVTAIEDVQMETILQNWSRIRTHLKGVKEQ---EELWGVVLGDVGLEVEDLIFELEEKRHLSMFEDEEEAEGNNGMDISELETIIEETPPTNSTPNKRFSMPQTYSTPSQ-PDDSALLGLFARLQPLRASLDFLPMRLSMFCQDLEMKREKLE-YKK-------ESDAEVLRKELDEVFRNA------TMCESVERSIGKLQEAATLAKRIESFEAKKIHYPSIIEKGVKDRITVNRVDALNA-----SIKVMDGLLDDIDFSKTQQLRDSISSIITMDSPATGSVVDTPGSSPASSVVLSNGNGRKGSSTPNVGSSSRRGSSVASTNRKRYSGIPQGAATLSAGRRSSIPRASFSGSLTSPTRSQTNPSFTPRPASRTSTAPTKTPDNRPRWNSSTNTNDLNIGHTHKTLSATTPSRNPNRNSRSNIPTPSPLSREASRSPVPPHMRSSSRAMSRLASPTPNRLYSPTPSRSILDPPPYSKLRKQSTPNLPTGARNRQSYAGISITRSSPVEDRTKTQRPETSLGHSTASRRLSGIP.............................................................................................................................................................. 696

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 2 4 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.