Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF04476.13; MFNB_METAC/3-229; 4-HFC-P synthase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst LLVSPINREEAIIASLGGADIVDVKNPKEGSLGANFPWVIRDVKEVVNGRQPISATIGDFNYKPGTASLAALGAAVAGADYIKVGLYDIQTEAQALELLTKITLAVKDYDPSKKVVASGYSDYKRINSISPLLLPAVAAEAGVDVVMVDTGIKDGKSTFEFMDEQELKEFTDLAHEHGLENAIAGSLKFEDLPVLERIGPDIIGVRGMVCGGDRRTAIRQELVEKLVLast
1 -103.000PF04476.13; MFNB_METAC/3-229; 4-HFC-P synthase  ali  100  1LLVSPINREEAIIASLGGADIVDVKNPKEGSLGANFPWVIRDVKEVVNGRQPISATIGDFNYKPGTASLAALGAAVAGADYIKVGLYDIQTEAQALELLTKITLAVKDYDPSKKVVASGYSDYKRINSISPLLLPAVAAEAGVDVVMVDTGIKDGKSTFEFMDEQELKEFTDLAHEHGLENAIAGSLKFEDLPVLERIGPDIIGVRGMVCGGDRRTAIRQELVEKLV 227
2 -10.400PF04481.12; YCF23_CYACA/1-245; Protein of unknown function (DUF561 topsan)  ali follow..  17  17VISGLTNLNYARASQRACVSYIDIAA---------DPQLVKVVKANVNIPICVSGLEIQ----------PIYNAVLAGADLIEVGNYESLYKRNTVLSVCKIITLVEEIKKLCPRVPLTVTIPYILNQKDQINLCKQLESLRVDYIQTEGNSISKCKNHCVQDLQTLACTYELVKHTQLPIICSSGLSDVTVPLAFSLGASGIGIGKFVTSYYEEEKI-VSILSKIK 234
3 -9.670PF00697.22; TRPF_YEAST/24-221; N-(5`phosphoribosyl)anthranilate (PRA) isomerase  ali follow..  17  2..........AECALDSDADLLGI---VPNRKRTIDPVIARKISSLVKAYKNSSGTVGVFRNQPKEDVLAL--VNDYGIDIVQLHGDESWQEYQEFLGLPVIKRLVFPKDCNILLSAASQKPH-------------------SFIPLFDSEAGGTGELLDWNSISDWVG--RQESPESLHFMLAGGLTPENVDALRLNGVIGVDVSGGV---ETNGVKDSNKIANFV 196
4 -9.540PF03437.15; Y419_ARCFU/1-246; BtpA family  ali follow..  15  26..VIDKAVKDARAIEEGGADALILENPFLKEVGKETVAAMTVIACEVKRDVSIGLGINVLRNDAVAALAIAKAVNADFVRVNQLFFTSVSPEGILEGKAGEVMRYKKLVDCRAMIFADIAVKHAVHFASLEDYCLNAER------SLADAVILTGKTTGGEVSLEELKYAKKTL---KMPVLAGSGVNAENAARILKW-CDGVIVGTYI---KRGGLVDAERVRRIV 241
5 -8.740PF03932.14; CUTC_ECOLI/3-200; CutC family  ali follow..  16  2LEICCYSMECALTAQQNGADRVEL-TPSLGVLKSVRQRVTIPVHPIIRPRG------GDFDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD--------MPRMEKIMAAAGPLAVTF-HRAFDMCANPLYTLNNLAELGIARVL-----TSGQKSDALQGLSKIMELIAHRDAPIIMAG--AGVRAENLHHFLDAGVLEVHSSAG................... 198
6 -8.680PF01729.19; NADC_ECOLI/131-295; Quinolinate phosphoribosyl transferase, C-terminal domain  ali follow..  27  82VEVEVENLEELDEALKAGADII--------MLDNFETEQMREAVKRTNGKALLEVSGN-------VTDKTLREFAETGVDFISVG.............................................................................................................................................. 151
7 -8.660PF00977.21; G8AG50_AZOBR/3-230; Histidine biosynthesis protein  ali follow..  16  31.......ADQARLFESQGFELVDLNGAFEGK--PVNGKAVESILGAVAIPVQLGGGIRDLKT--------IAHWLEKGVSRVILGTVALREPELVREACREFPGKV--VGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDG-----AMGGVNVEATSDLAFHLTTPVIASGGVSIDDLIALKKEEDT--GIEGVICGR............... 221
8 -6.710PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus  ali follow..  12  25.......LKGVDVLPHALINNVEEK------LGFQGEKLREYVRWLSDRILSLRTSPRY-PVRCAEYIASLEKEAQGLPLYIEGPV-DAGNKPDQIRLLTAITKELTRLGSGVKIV----ADEWCN---TYQDIVDFTDAGSCHMVQIKTPDLGG--------IHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVH............................ 212
9 -6.710PF04131.14; NANE_PASMU/35-226; Putative N-acetylmannosamine-6-phosphate epimerase  ali follow..  17  95AMADCSNFEEGMYCHNLGVEIIGSTMSGYTGGEIPAEPDYQLVKDLNAAGCRVMAEGR-------NTPELAKTAIEIGAYSVTVG.............................................................................................................................................. 173
10 -6.310PF00682.19; LEU1_ECOLI/4-273; HMGL-like  ali follow..  15  20.LSVKEKLQIALALERMGVDVMEVGFP---VSSPGDFESVQTIARQVKNSRVCALA----RCVEKDIDVAAESLKVAEAFRIHTFIATSP-RSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGATTINIDTVGYTMPFEFAGI-ISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAM--GERAGNCSLEEVIMAI 245
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;