current user: public

If you have questions about the server, please let us know.

Query: PF04684.13; A7TQF6_VANPO/3-609; BAF1 / ABF1 chromatin reorganising factor, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .
# Score Template Links and tools%idFirst NLYEYKHPIINKYLATGSEDGTGRKFPTLEAWYNVVNDYEFQARCPIILKNSHRNKHFTFACHLKTCKFKILVSYCGNNSNNNNNNNNNNNNTSHSNQNIGTGTGTGTDSNNNNNIDFQSQLDGLNVVQNLHHQHQVGDEDDEDDVTKNVIVDVKDENIDHNGNSNNINDNRTNSNEIKKDTNNSNNDENVEDENENDSRDHNDEKPTTNTTTSTSTASTKYEDSGAAEDDDVSAAIAAAVAAVHDSATAVATIDESKSATSNNTSPNSTTNSSNDNHQLSINGNSSQFHDDHSNVLAHAMEDDQKSDHTLRGPFMVTKIDPYHNHPLESNLTLAKFVLTKIPRILQHDLNFDQILQDLCNEEDNTVAKFRVSQYVEESGIQDILKERYGLTDVDLDKKLIAQIARRVTTYKARFVLKKKKNGDYGIPGAENVLINNHPQPRYSRAANIETNLPPNVEPTSTGNDNQLSVLEEERQLHSAFSEVREAQAAARAAMGDVSDFKRPIQMVEQSIDEDDNQDEEDTPRKRSRNDLLKLNQMNSMVNDDGNLVSLEDAADDKLPHEVAEQLRLLSSHFKEVEAQQQNDENANKIIKDDIPDENIQPELRGQLast
1 -155.000PF04684.13; A7TQF6_VANPO/3-609; BAF1 / ABF1 chromatin reorganising factor  ali  100  1NLYEYKHPIINKYLATGSEDGTGRKFPTLEAWYNVVNDYEFQARCPIILKNSHRNKHFTFACHLKTCKFKILVSYCGNNSNNNNNNNNNNNNTSHSNQNIGTGTGTGTDSNNNNNIDFQSQLDGLNVVQNLHHQHQVGDEDDEDDVTKNVIVDVKDENIDHNGNSNNINDNRTNSNEIKKDTNNSNNDENVEDENENDSRDHNDEKPTTNTTTSTSTASTKYEDSGAAEDDDVSAAIAAAVAAVHDSATAVATIDESKSATSNNTSPNSTTNSSNDNHQLSINGNSSQFHDDHSNVLAHAMEDDQKSDHTLRGPFMVTKIDPYHNHPLESNLTLAKFVLTKIPRILQHDLNFDQILQDLCNEEDNTVAKFRVSQYVEESGIQDILKERYGLTDVDLDKKLIAQIARRVTTYKARFVLKKKKNGDYGIPGAENVLINNHPQPRYSRAANIETNLPPNVEPTSTGNDNQLSVLEEERQLHSAFSEVREAQAAARAAMGDVSDFKRPIQMVEQSIDEDDNQDEEDTPRKRSRNDLLKLNQMNSMVNDDGNLVSLEDAADDKLPHEVAEQLRLLSSHFKEVEAQQQNDENANKIIKDDIPDENIQPELRGQ 607
2 -10.100PF15847.5; H9KWV3_CALJA/1-312; Major keratinocyte cell envelope protein  ali follow..  78.........................................................................GGFGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGSSGGSSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGGSSCGGGSSGGGGSGYVSSQQVTQTSCAPQQSYGAGSSGGGGGGGGGSCFSSGGGGGGSGCGGGSSGGCVISGGGSGCGGGSSGGGGGGSSGGGSGSGKGVPVCHQTQQKQAPTWPCK........................................................................................................................................................................................................................................................................................................... 312
3 -9.890PF06933.11; O44418_CHIPA/1-756; Special lobe-specific silk protein SSP160  ali follow..  10  109.........................................................................SSSSTTSTSNSTTTTSNSTTTTTNSTTSSNSTSSGLTSSASVVSLIDTIAWVYQDSSVGIAYLMVSILALFYGQSVSAPPYPDLGIPALPANCSGPGVPQSVQIRAAIAYVNITIYFINMTGQQFEDLQGPVATDCGCPNTTSVAPLVLEWEAILAALQALANSTASANSTTSSNSTTTTTTNSTSTTTTNSTTTTNSTSSSNSSTIAGCIDISANFTIALQSLQALLLQESTCAPALAANAKKSGV............................................................................................................................................................................................................................................................................................... 355
4 -9.680PF08192.11; SSY5_YEAST/2-693; Peptidase family S64  ali follow..  7......................................................................................................NKKKNEEKENTDLPADNEQNAAETSSSNVSGNEERIDPNSHDTNPENANNDDASTTFGSSIQSSSIFSRGRMTYGTGASSSMATSEMRSHSSGHSGSKNSKNLQGFKDVGKPLRAVSFLSPVKEEESQDTQNTLDVSSSTSSTLATSENARENSFTSRRSITLEYIHKS................................................................................................................................................................................................................................................................................................................................................ 175
5 -9.200PF14925.6; D2H5Y1_AILME/274-908; Domain of unknown function  ali follow..  10  326..................................................................................ATEKTVDYGEHRTNNGLLEEIVSPANSIGPEGFTHASILEGKMEMKVQSPCVFQQVAVVDRIAVDKEIDDKQVKPTDDILTDEISENKPSRNNCSESISELKYSDDFNSLCSSEDFCTTEDSSKILQAHDSSPGAENTKHNQYTSKSSETILSIRKNSSEKSSILSPPFSAGSPVYSYKRSHISKIQDTSLEEVSSISTSDLSSSHWTEEKENQIDRNSMHNSKVIKRGQDISIKLKTRTGCKSSEKSQSPRTSQVSSYLPS--LSELELNVLDSSTPDHLAED----------DEFPSLNI-SKQC--------KDICELVINKLPGY.................................................................................................................................................................................................... 634
6 -8.870PF09726.9; H2MT57_ORYLA/2-679; Macoilin family  ali follow..  203.....................................................................................................................EQQMLQRQEREAEEAAKGASEVETLPVTQNGAPPNKKTSVPLPELEYREKGKDGRGGGEAKKQHNSNNILQPSLDSKIHEMEYMENHMNKRLTTELDSTESLLLKEDNNSSCSSSSSSSSKNYKNASSNAAALNSSPRGHSTTNGSVAFSASSSTTNTAKNDKKHKLPVGKGTAGGSHKDPADNWIPNNQLSKPEALVRLEQDIKKLKADLQASRQVEQDLRSQISSLGSAERSIRTELGQLRQENELLQNK-----------LHNAVQAK------QKDKQTVGQLEKKLKG-EARATAEKQLAEEKKRKKLEEATAARAVALAAASRGECTDT----RRRITELETECKKLTMDIKLKEDQIRELEIKVQELHKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDL........................................................................... 598
7 -8.550PF12361.8; A5KDR7_PLAVS/546-849; Duffy-antigen binding protein  ali follow..  10  97...............................................................................ANSPGDDTVNSASIPVVSGENPLVTPYNGLRHSKDNSDSDGPAESMANPDSNSKGETGKGQDNDMAKATKDSSNSSDGTSSATGDTTDAVDREINKGVPEDRDKTVGSKDGGGEDNSANKDAATVVGEDRIRENSAGGSTNDRSKNDTEKNGASTPDSKQSEDATALSKTESLESTESGDRTTNDTTNSLENKNGGKEKDLQKHDFKS................................................................................................................................................................................................................................................................................................................................ 304
8 -8.010PF05432.11; D2GX57_AILME/17-317; Bone sialoprotein II (BSP-II)  ali follow..  11  45................................................................................QSSSDSSEEDGNGDSSEEEEEEEETSNEEENNEENANSDENEDEESEAENTTLTATPGYGEETTPGTGYIGLAAIQLPKKSGDIGHKATKEEESDEEEEEDEENEENEAEVDENGQGINGTSSNSTEAENGNGSSDGDNGEEGEEESVTEAHTEGTTVVGKQDNGGSKTTVSPDGGFERTTPPPELYGTTTRPSGEATPTGYEGEYEQTGTNEYDNGYEVYENEN.............................................................................................................................................................................................................................................................................................................. 269
9 -7.880PF17076.5; SBE22_CANGA/1-813; SBE2, cell-wall formation  ali follow..  5.........................................................................RSNLGTLPEEPSVESKSGRTLAGITSSRKESGMRSRTSSGSAQAVGLGLGRRPSDNLFHGHADPLDTMQMLSEALPQPPKIEHGMRRERPISNDSIMTTKSSEIFSTSSSDTQSNISVATNDSEDHSFGMDKSVDNSSTNATLTNRSIENRSNGDSYSIGEKSDVSVNRSTKSGNNPLQRTQSETISVNMSHNRSMNGAMKQPTPPFMGKNSSIPNLRYNSQPQQDNRSVPNGEFGSKLYNLSNSTSAIIPNAGTGSKLALTPSQRYRLRKEQSEHALRDVIKRKEKLYDEQDGIIELQEGDIDGSFIFNV............................................................................................................................................................................................................................... 315
10 -7.700PF04931.13; K2SXE2_MACPH/89-879; DNA polymerase phi  ali follow..  629.........................................................................................................SKKESMSGQQDLFDQQGSEDGEDASEDDEDEQDSDVEMVEADGSDVEEVEEASDVDEEEEEDEDEEGGEDGSDADDEELEKFNAALAKTLNTSMLTGEGEDSDDDDEADMDDDQMMALEPHLTKIFKQRQEAANKSKKKDNKDAKAT................................................................................................................................................................................................................................................................................................................................................................... 775

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.