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Query: PF04862.12; F2DPS4_HORVV/28-184; Protein of unknown function (DUF642 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GLLPNGDFRNGPDKSQMNGPVVTGKHAIPNWELSGFVEYIESGHTQEDMILPVPVGANAVRLGNDATIRQQLKVSRHTYYSISFIAARSCAQAEKLNVSVDPEFGVLPIQTVYTNTGWDTYSWAFKPRHSTVWLSIHNTGIEENPACGPLLIAVAIKLast
1 -86.500PF04862.12; F2DPS4_HORVV/28-184; Protein of unknown function (DUF642 topsan)  ali  100  1GLLPNGDFRNGPDKSQMNGPVVTGKHAIPNWELSGFVEYIESGHTQEDMILPVPVGANAVRLGNDATIRQQLKVSRHTYYSISFIAARSCAQAEKLNVSVDPEFGVLPIQTVYTNTGWDTYSWAFKPRHSTVWLSIHNTGIEENPACGPLLIAVAIK 157
2 -27.000PF15425.6; R5VDU0_9BACE/21-220; Domain of unknown function (DUF4627 topsan)  ali follow..  10  1NLVKNGNFDTPLNNEKTYA----SIPSTEDWFAFDKTN---GATTISPATDDEKHGNAVQIETTTDNLGQRIQGAEKAVYTLSFDMKALTDGAQVRFFIRDAKTREGFDLSDESTKNQSAAAYSRVIKKAGRSASFDFSKTVNAFASIKGIDNVSL. 200
3 -20.400PF02018.17; XYNC_PAEBA/197-346; Carbohydrate binding domain  ali follow..  10  2QALFKAYFEDG---------------NIGNWRARGTEKLEVVSG-------IGHNSNRSLKTSSRSEVEVLPYLQKGSTVHISFWAMYDEGPATQFNRDTANLEYAMFASTTLNKGQWKKIEADIIVPAESTGIS---AETPWKQSSEVTETDT... 150
4 -17.300PF07675.11; HAGA1_PORGI/230-407; Cleaved Adhesin Domain  ali follow..  10  2.YVLNESFDTQTLPNG---TMIDADGDGHNWLSTYNTATHTGDGAMFSKSWTASSGAKIDLSPDNYLVTPKFTVPENG--KLSYWVSSQEPWNEHYGVFLSTTGNEVKSEGVKAPAPYQERTIDLSAAGQQVYLAFRHFGCTGIFRL--YLDDVAV. 178
5 -16.100PF00629.23; H3CE92_TETNG/270-434; MAM domain, meprin/A5/mu  ali follow..  11  2......DFERENI------GMIQGQEDKADWVRVASAPGGPHTDFSNLGKCAGSGYFMHFSTGDTAQLESRILYPKRGQQCLQFYYYSSAGANDTLKIYVTGKLRFVETINGPPQEMWQLHHVRLDVKMK--RVVFEGTKEGSGPTEGGLLDDINIS 160
6 -14.700PF09212.10; B9K988_THENN/495-664; Carbohydrate binding module 27  ali follow..  11  10......DFSRP--------------EEVKNWWNSGT----QAEFKTPDIEWNGEVGNGALQMNVVLP-RKFDQLPVCEILEYDIYIPDVEGLTGRLRPYAVNTSIDSGELVSFDGKKYRKFRIEFDKTPGVNELHIGVVGDHLEYDGPIFIDNVRL. 167
7 -14.500PF16405.5; R5JCU2_9BACE/235-375; Domain of unknown function (DUF5013 topsan)  ali follow..  15  4....TEPFARQDEGTEKSG-------VLKDWEYTPNLLTQNGGRTGTFYEASAGKTFINMSTLENGKIWQKVTLPAGT-YEFSFNVNTSKGNNLNPYGAVVVADVFPDTDQVAATA---LASVNWGRTTGTKTLSF-TLDEETTLLLG......... 141
8 -11.900PF04300.13; G3W924_SARHA/80-258; F-box associated region  ali follow..  11  9NLLRNPCAEEG----------------LEFWRIDQNGG--PRVKKYFVTSYHTCLKSQMIDLKAEGYWNELMDVVRACRYQICVQLLSANFL------VLDTFEPPPMEIKQWSDCEWKEVSHTFSNYPRGVRIRFQHGGKDTAGWYGSRVTNSSIT 178
9 -11.500PF17974.1; R5QE63_9FIRM/1234-1424; Galactose-binding domain-like  ali follow..  10  21VVKFEQNFEKSVQGLYPFVVGGIEGVEDNRIHLSERHDKYTQAGWDVKKMDDVLDGDWSVKINGLTTIPQNFRFEPGVTYNVSFDYQAGSDGIYAAAVEYNGNVQLKELPMSMGKEKDGHFTMQVTGDSGQTWFGIYSTEKAPDLQG--AEANFG.. 190
10 -10.700PF17829.1; C6CVT9_PAESJ/810-985; Gylcosyl hydrolase family 115 C-terminal domain  ali follow..  5  1GYAEADGY----VSIVAEHYSRLNANGNKTWQIIHDLG------RGNGGVRAYDPDLGAVDTSTAPSLEYDINLTSAGQFPLEIYRIPTLNSKGKVRFAVS-IVVESAAADEGQGTIWVSNLFHPAMTAGKHTIKLWMVDS------FMMIDKMVL. 154
11 -10.600PF09092.11; E6SWL0_BACT6/28-191; Lyase, N terminal  ali follow..  7  6......SFEERRVPTATDSRLTVSNEHYRDGTQSLCWSFGPKSILSIKKDLKFEPKDPTGKDTYLSAFIVWVYNEQAQDKTIEFEFLRNGKKCTSFPFGIN--------------IGWRGAWVCYERMQGTPETGMDEIRVVAPEVKGKLIDHLIT. 147
12 -10.400PF16990.5; D9SMC4_CLOC7/491-611; Carbohydrate binding module (family 35)  ali follow..  11  33..............................................................GATDNLSLNVTVDKGGEYSLIVRHSAPYGSKEYNVLVNGAVVATNKIQESSLFTDSTAVTVKLTAGANTIKID--------RGWGWFNVDCLMLK 119
13 -9.610PF17997.1; A0A0D3V661_9BACL/58-230; Insecticidal delta-endotoxin CryIA(c) domain 5  ali follow..  12  1..LQNGDFEELYGFGKN------------GWTISNNITIQADNPIFKGHYLHMSGAKDTV----PTYIYQKIDESKLKPYT-RYQVRGFVGSSKDLGLVVTRYGKEVNVVMNPEYNTPVTDGYTSDTCSCQPNLEKKHVVCHDYHQFKFHIDIGQLN 139
14 -9.480PF03944.14; C18BA_PAEPP/538-670; delta endotoxin  ali follow..  7  25......................................................NSGDSLRLGPTTAITYMLSGDGRTIYKLVLRVSGVITRITAKVRGNSIGYLEYINTVDNNQGKFQDFEFPTITIDAQTPIVLEFSATSN------DLMNLIF. 129
15 -9.210PF15043.6; L9KNQ3_TUPCH/4-163; CB1 cannabinoid receptor-interacting protein 1  ali follow..  11  26..............................................................GQRFGQNRTIKLLTGSSYKVEVKIKPTTLQVENISIGGVLVPLELKSKEPDGDRVYDTEGVAPTKSGERQPIKFYNYHKRDHCQWGSPFSVIEYE 143
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;