current user: public

If you have questions about the server, please let us know.

Query: PF04888.12; C5B9R1_EDWI9/106-478; Secretion system effector C (SseC) like family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370
# Score Template Links and tools%idFirst MVLAASLLGVKALGDNANLKALALKIREQGAENLRLRQNEDLRKQVDKAVEDQAKAQKAGIFSAIVDWIVSIAEVVSGIGKLLIGDFAGGAMDVAAGCSGLVKAACETLALIDKDHADKYQAIADVAGKVQLAFELAGMVVDLVSVGRGVMAGKSIAKAAETAMEGAAGEALHNAVTEGSEEAIKAAAKEIGKEVAGQVSEEVIRNLAEQSGRFLGQGPLLKALSKEAIEKMVTQAVETAVKNALKSGGDISLEALTKQVVKEVQRAVIKAIIGACITSVANNAKSTTRATLQGTNGIYQGVITKERAELQKVIQQLMNESSFLQFMLDEFEKVKKNAQENISNLMDGAGKALSSAADAQQKSGAMLSSIAANLast
1 -112.000PF04888.12; C5B9R1_EDWI9/106-478; Secretion system effector C (SseC) like family  ali  100  1MVLAASLLGVKALGDNANLKALALKIREQGAENLRLRQNEDLRKQVDKAVEDQAKAQKAGIFSAIVDWIVSIAEVVSGIGKLLIGDFAGGAMDVAAGCSGLVKAACETLALIDKDHADKYQAIADVAGKVQLAFELAGMVVDLVSVGRGVMAGKSIAKAAETAMEGAAGEALHNAVTEGSEEAIKAAAKEIGKEVAGQVSEEVIRNLAEQSGRFLGQGPLLKALSKEAIEKMVTQAVETAVKNALKSGGDISLEALTKQVVKEVQRAVIKAIIGACITSVANNAKSTTRATLQGTNGIYQGVITKERAELQKVIQQLMNESSFLQFMLDEFEKVKKNAQENISNLMDGAGKALSSAADAQQKSGAMLSSIAAN 373
2 -9.150PF02466.19; TIM22_CRYNJ/52-172; Tim17/Tim22/Tim23/Pmp24 family  ali follow..  6TIAGVGGLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNMWSSGRGFAKVGMVYSGVECCIEGYRAK-GVSAGFLTGAILARNAGPTAMLGGGV........................................................................................................................................................................................................................................................................... 115
3 -8.250PF05844.12; O68699_YERPE/13-306; YopD protein  ali follow..  65..........GDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANQVHQGYSQAEVKE------KEVNASIAANEKQKAEEAM---------------NYNDNFMKDVLRLI--EQYVSSHTHAMKAAFGVV................................................................................................................. 294
4 -6.720PF14962.6; H0WJV0_OTOGA/1-192; Mitochondria Localisation Sequence  ali follow..  75........................................................................................................................................................TEHITNMKEKTKAELHPLQGEKEHIAEAEKASPEAPEVSVVEAEVVAAEEIPDATVAALTEASACPG--GVEAAPETAASGAETAPEVPEAVVGDTTEEVSAGTTPEVTDPTLGE.......................................................................................................... 187
5 -6.170PF04103.15; T176B_MOUSE/60-224; CD20-like family  ali follow..  13  1....................................................................SLGVTQILLGLVSCALGVCLSGSVAILAGVGTIVHEKRQGKLSGQ.................................................................................................................................................................................................................................................................... 61
6 -6.140PF04145.15; J4KR46_BEAB2/27-158; Ctr copper transporter family  ali follow..  26IISLIAVVLIAMGYEGLRATCRVYEKSIDARVESAPNAFQDPVTETTPFLRPGQNRDSLARHSHLIKSLLYGFQNFYAMVAVSLGAFLG............................................................................................................................................................................................................................................................................................ 128
7 -6.030PF04286.12; B2JUN1_PARP8/44-418; Protein of unknown function (DUF445 topsan)  ali follow..  2.........................................................EAAMVGALADWF--AVVALFRRVPI-TAIIPQNKDKIADNLAIFVRE-----------DESSIVGLIRKH----------NPAQSIANWLCVDANTRRLGDYVLKLTGGILDLLDDARIQSFIKDALDAMLDKILSKATGAILDTLTRDGRHQELLDEGIEHLMALLREPGVRTFIAEQIVDWFKRQYPTLEKIMPSEWLGESGANVVADTVNNMLLRVSEDRSHKLRQKFDEAAARL-KSDPAFLEKGEEIKRYVKESENLALYVRDLWAQLRDWLRRDLACDDSVLHSKIGAMGQWIGRELAQDPSLRRSL... 303
8 -6.030PF02674.16; Q5ZVU6_LEGPH/6-144; Colicin V production protein  ali follow..  10  3IAIVAIIALSVLTGLFRGFVKELVALCVWVLAIWLGFNYSQSLDPWLSSYIEEQSVRTAIGFIIILFATLFVGGVVNAILSFILKRAGLSGTDRTLGMGGFLRGV............................................................................................................................................................................................................................................................................ 108
9 -5.880PF05752.11; VP2_SVSAP/1-165; Calicivirus minor structural protein  ali follow..  17  1MSWLVGALTFGSLADVAGTVSAQLEKQNELMETWMNKQEALQKSQMELTRDLSINARVQSALDAGFD--VSARRIAGSGERVIWG................................................................................................................................................................................................................................................................................................ 97
10 -5.590PF09531.10; G4NHB6_MAGO7/17-612; Nucleoporin protein Ndc1-Nup  ali follow..  283........LTSDSKDPNGSLLNGLKSKKLPVKCFAMWELGLIACDFDVRRKADIDRKDGPVWAQVFRVCLEVIKEMETNIDNYGKVPTPAPATEANSSADGRFSEEVQRGIQAPKNESIEIKSSKNAFRAEVEKYVDKLARDPSRASRLDDVGKAAGEAKQKLLEMRNQLAVSDDPQYPFQQYIRNILSSPVGWP---LRQDYSRRLTAAVFGAPYGEPSLFVNATVALSQLAVRSLQEDKYGNVQRDVATIIRSLTSQKLDTFKNSLPFHWTDVQKHRSCPEVEIVLEALRDGLSELVLNFEPYRRDRLSLTDMRLA....................................................... 595

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.