Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF04991.13; Q832Q2_ENTFA/24-252; LicD family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst CRSNNLHYTLFYGTLIGVERHKGFIPWDDDIDIVMPRPDYELLIKILKNDSNYQLLSFETRKHFRYPFAKLVDPNTVAHSKQYFGGEDKDLGVFVDIFPIDGIPDTQKERNELRKITEQYRLNLMDTLGLSYARSFHLSKALIKLITRYPNHFKVKKVGNNQYWRDLYQTEAKKTPFGATKHCGYLEWIHIDWGVFPNEWFLEYEDVEFEGHKFMAIKNRKQFLTLRYGLast
1 -97.600PF04991.13; Q832Q2_ENTFA/24-252; LicD family  ali  100  1CRSNNLHYTLFYGTLIGVERHKGFIPWDDDIDIVMPRPDYELLIKILKNDSNYQLLSFETRKHFRYPFAKLVDPNTVAHSKQYFGGEDKDLGVFVDIFPIDGIPDTQKERNELRKITEQYRLNLMDTLGLSYARSFHLSKALIKLITRYPNHFKVKKVGNNQYWRDLYQTEAKKTPFGATKHCGYLEWIHIDWGVFPNEWFLEYEDVEFEGHKFMAIKNRKQFLTLRYG 229
2 -10.900PF10706.9; A6TJ11_KLEP7/73-246; Aminoglycoside-2``-adenylyltransferase  ali follow..  25  16ADERNLPLWIGGGARLGRVTRK-----HDDIDLTFPGERRGELEAIVEM.................................................................................................................................................................................... 63
3 -9.050PF09970.9; A3DMD4_STAMF/4-178; Nucleotidyl transferase of unknown function (DUF2204 topsan)  ali follow..  10  13.SSYGVKFVVIGDTVVQL--ALRIKLFTGDVDLFVYEPSPLVEEDFYRE.................................................................................................................................................................................... 58
4 -7.860PF14907.6; Q8KKS5_RHIEC/2-289; Uncharacterised nucleotidyltransferase  ali follow..  14  60.DRAGIAWFLVKGPDLALLRPMT------DLDIMVKPADAQRVQRLMFD.................................................................................................................................................................................... 108
5 -7.430PF14948.6; F6TF72_CALJA/33-132; RESP18 domain  ali follow..  15  3DQGNFGPPRIAIPVFLQQIIPRGLF-WKDDITQDVMTQKMEHVSRL....................................................................................................................................................................................... 55
6 -7.380PF08074.11; E5SBN8_TRISP/1816-1986; CHDCT2 (NUC038) domain  ali follow..  17  13..............LAGIVVH-GYGRYQNDPRFAIINEPFSS........................................................................................................................................................................................... 42
7 -7.150PF06136.13; D7SKL0_VITVI/39-376; Domain of unknown function (DUF966 topsan)  ali follow..  34  2....SVVYYLSNGQLLNVLRGNGFV-WHDENDFIYPAHGQEYVLK........................................................................................................................................................................................ 84
8 -6.980PF12587.8; H2J0P9_RAHAC/6-91; Protein of unknown function (DUF3761 topsan)  ali follow..  28  61CRDGTYSFSTHRGT---CSGHGGVAAW.......................................................................................................................................................................................................... 85
9 -6.900PF12448.8; F1Q8C4_DANRE/371-537; Kinesin associated protein  ali follow..  15  64................DSNRKPG-TPGSHDLQAALRREERERKLNALAEDKSQFYEDSEDGGGPLTPADSIMSLGLNSVFSIYSSRSYLPEKLQI-VKPLEG............................................................................................................................... 166
10 -6.810PF08843.11; B4SCH8_PELPB/39-286; Nucleotidyl transferase AbiEii toxin, Type IV TA system  ali follow..  8  7.HIQGLQLAFGGGTSLAKAR------FSEDVDFKATITPRKKIIAALEDGGLVLVAKPMVRDGSRFFSLELDYGATFMRNQRLRTHIRVEVRFVAPQMPVVFKPAEIGSMPYIDPVEIAADKLSALSWRLLDEEERQDKTLIRHVHDLAALETLIASNVKFPDLVRQSIAGDYNRSDIPQEQRLRGVMTNLQNAVWKEAYQSFVQDMSFA--RDDEIIPYESALDA... 248
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;