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Query: PF05086.12; O15924_DICDI/5-925; Dictyostelium (Slime Mold) REP protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KQLIPWNTYIFDYIKILEYFSPIERVPGNEIIPHMYSMHILVLKEVFREALDRSEAYQNTGSPYIINPLDIKTIFKGTSFPIQLTNGTKDDLDHLFSIKNDEKGRILVKDCDQAIFIIDHLSRCSDTQVFNKKNITGFRNLEKMVSENGYKIKDHRQFGLHWFSFLNILRSSLQYYQFNFFKNFDLISTLTTFHCVMVDDQNREEEKLSDFYTLYPFIDLEEDIEADNTSRERIKPSSSKNKTTTTTTTTTTTVQQPVTRKRKNIVQPLQPIQPQQSKKPSTQPIQPIQPKKTKTQPIQPIQPIQPPQSKYPHKITRKSGSLKKVRIDQISSQSYDNEMGDVENQEIIPVEEVSSNPNKIRNCLSEVMNSKGEIKTNLVKAIFDSLQSKNYTIDLLDSIFSQNKSERVVTLPSRLFELANSINFEEINFGKIPEDLFSMFESISFEKNTNIIIPTQEENSFAFLWIPIINGVTSTSIFLTPNNSPVNLIKVKSVIKFIQLCIVMKELLDFMTIRSINYETFKSIISELLGMSERVLNLEQDVKKLKDLLLKKSKKSTIDDESELLSRVSNHREFATFLYEFINKNKHLSLSKSDNYLKFVDSITSTLCVEYDSNSIEHKIGFINHCRSEISRFQPTGDIIKMNSLFSSFTPSNINTVSQQSEEDLKRKYSLMSSDLSGLLKDKSRFNPSNFDRYVLISFNNNVSGHCKVFSFGDVSNGFSITNLRNVYVQDSNLYNRYEEYMGKTRVITAFFFAPCLIQLTNFIFQTDKITNDKNISRQIKSIKIYNRSYINIEVKVGGNTIDSVKSGFSKVVQINSSEFSFTISCLNISFSSVLISKNKLNNLSSLVADYYVKSTELLRKADKLEQLLKKYIENFQKLNTITETEEDIIEAFDFESSAGDDIRNEDEDDEDEDEDDDDDELast
1 -209.000PF05086.12; O15924_DICDI/5-925; Dictyostelium (Slime Mold) REP protein  ali  100  1KQLIPWNTYIFDYIKILEYFSPIERVPGNEIIPHMYSMHILVLKEVFREALDRSEAYQNTGSPYIINPLDIKTIFKGTSFPIQLTNGTKDDLDHLFSIKNDEKGRILVKDCDQAIFIIDHLSRCSDTQVFNKKNITGFRNLEKMVSENGYKIKDHRQFGLHWFSFLNILRSSLQYYQFNFFKNFDLISTLTTFHCVMVDDQNREEEKLSDFYTLYPFIDLEEDIEADNTSRERIKPSSSKNKTTTTTTTTTTTVQQPVTRKRKNIVQPLQPIQPQQSKKPSTQPIQPIQPKKTKTQPIQPIQPIQPPQSKYPHKITRKSGSLKKVRIDQISSQSYDNEMGDVENQEIIPVEEVSSNPNKIRNCLSEVMNSKGEIKTNLVKAIFDSLQSKNYTIDLLDSIFSQNKSERVVTLPSRLFELANSINFEEINFGKIPEDLFSMFESISFEKNTNIIIPTQEENSFAFLWIPIINGVTSTSIFLTPNNSPVNLIKVKSVIKFIQLCIVMKELLDFMTIRSINYETFKSIISELLGMSERVLNLEQDVKKLKDLLLKKSKKSTIDDESELLSRVSNHREFATFLYEFINKNKHLSLSKSDNYLKFVDSITSTLCVEYDSNSIEHKIGFINHCRSEISRFQPTGDIIKMNSLFSSFTPSNINTVSQQSEEDLKRKYSLMSSDLSGLLKDKSRFNPSNFDRYVLISFNNNVSGHCKVFSFGDVSNGFSITNLRNVYVQDSNLYNRYEEYMGKTRVITAFFFAPCLIQLTNFIFQTDKITNDKNISRQIKSIKIYNRSYINIEVKVGGNTIDSVKSGFSKVVQINSSEFSFTISCLNISFSSVLISKNKLNNLSSLVADYYVKSTELLRKADKLEQLLKKYIENFQKLNTITETEEDIIEAFDFESSAGDDIRNEDEDDEDEDEDDDDDE 921
2 -12.600PF02948.15; F7CBF9_CALJA/21-192; Amelogenin  ali follow..  13  19.....................................................................................................................................................................................................LKWYQSMIRPAYPSYGYEPMGGWLHHQIIPVLSQQHPPTHTLQPHHHIPVVPAQQPVVPQQPMMPVPGQHSMIPTQHHQPNLPP-PAQQPFQPQTVQPQPHQPMQPQSPVHPMQPLPPQPPLPPMFPMQPLPPMLPDLPLEAWPATDKTKREEVD......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 172
3 -10.500PF16625.5; G3QT31_GORGO/409-473; Unstructured linking region I-set and fnIII on Brother of CDO  ali follow..  10  1...................................................................................................................................................................................................................................................................SRPSITPRLWQDAELATGTPPV-SPSKLGNPEQMLRGQPALPRPPTSVRPASPQCPGEKGQGAPAE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 65
4 -10.100PF06346.12; M3YA74_MUSPF/617-776; Formin Homology Region 1  ali follow..  4..................................................................................................................................................................................................PPLPGHAYIPPPPPLPGSVGSSVPPLLPGEAGIPPPPPLPGGASIPPPPPLPGGAPPPPPLPGATVISPPPPLAGSTGIPPPPPLPGSAGIPPPPPPLPGGAGMPPPPPPLPGGPGIPPPPPIPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 160
5 -10.100PF07218.11; Q8ILZ1_PLAF7/1-782; Rhoptry-associated protein 1 (RAP-1)  ali follow..  12  13..................................................................................................................................................................HVLFRNVADGINVNGDNNYGKTIINNDFNFDDYNYWTPINKKEFLNSYEDKFSSESFLENKSSVDDGNINLTDTSTSNKSSKKGHGRSRVRSASAAAILEEDDSKDDMEFKASPSVVKTSTPSGTQTSGLKSSSPSSTKSSSPSNVKSASPHGESNSSEESTTKSSKRSASVAGIVGADEEAPPAPKNTLTPLEELYPTNVNLFNYKYSLNNMEENINILKNEGDLVAQKEEFEYDENMEKAKQDKKKALEKIGKESDEEPFMFSENKFLENQVKERNVAGSFSRFFSKLNPFKKDE--------VIEKTEVSKKTFSGIGFNLTEKEAKVLGVGVTYQEYPETMLYNCPNNSNLFDTIESLQGRVIDIKKR--TFEQQKECLKNMVLDLELNDTQCKFGTCIGSFGEHH-----LRLYEFENDLLKFHPNIDYLTLADGYK---LQKNDIYELSH----VNFCLLN---------------------PKTLEEF-------LKKK------EIKDLMGGDDLIK-ENFDNFMSISIT------CHIESL--ITSGLSYKARKLVYKIYSEIQKNPDELYEKLTWIKRYYTAYALEGVCSY-LEHDKSTELHIYNKIVDSVRYYSSCFKNVIV---NAIISGIHEKIKHFLKLVPRH------LLDYHFNSIFEKEIK-YSTSHIYFDPTVASYNLDRRT--MVTIINDYFEAKKKTVIVSRMKTDML------SLQNEESKIPNDKSANS........ 734
6 -9.550PF17532.2; A0A0C7T7K4_EBVG/1-148; Family of unknown function (DUF5451 topsan)  ali follow..  5.......................................................................................................................................................................................................................VRQRPAQAPPAKRQALETVPHPQNRGRLMSPKARPPRMQRRPRPPVAKRRRFPRSPQQVERPILPPVESTQDMEPGQVQSPPQITGMIQLCQDRYTMRPPIYLPALLANCGPAGLLRAHRLPQPKPPCQSRQRPSPDSQISP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 147
7 -9.360PF15356.6; G5C3D2_HETGA/23-136; Psoriasis susceptibility locus 2  ali follow..  12  1.........................................................................................................................................................................................................................................................SEDHSSPPSTEAREEESPPRLPLGPPIPGEPWPGPPLFEDPPPPGPSHPWGDLPDSGVWPPEAPSTDPPQPPLPDDPWPAGPQPPANPWPPAPEVDHKPHNEPDLDPPREEYR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 114
8 -8.990PF12526.8; Q8JJN7_HEV/686-799; Protein of unknown function (DUF3729 topsan)  ali follow..  12  4......................................................................................................................................................................................................ESTNPFCGESTLYTRTWSVSGFSSCFSPLEPPASGSLPPAEIDPPVTVDAPSPSILALPRPSVFEQTTPPLDPAGDAAASAPPGAPGVPPAPARPVTHPSGPRRRLLHTYP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 114
9 -8.750PF11235.8; H3B103_LATCH/224-387; Mediator complex subunit 25 synapsin 1  ali follow..  3..................................................................................................................................................................................................GATSATQSKQVVPQAPPTVQSQTSLLSTPSQPSQLPPGSAQQVAPPGSLSAAQAAAKMAVEAANSQKPGLATRFFSSAVPNLSQHPNTSGVGPPFSQPPVPTMTPGPISKMPPSTASLIPMTSQASLLPQQQQSQQPSQPSQQPLQPGGVPPGPVNVPQPGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 164
10 -8.480PF15240.6; G3RTV7_GORGO/1-150; Proline-rich  ali follow..  2..................................................................................................................................................................................................LLILLSVALLALSSAESSSEDVSQEESLFLISGKPEGRHPQGGNQSQGPRPPPGKPQGPPPQGGNQSQGPPPHPGKPERPPPQNQSQGPPHRPGKPEGPPPQGGNKSRPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQ.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 150

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.