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Query: PF05339.11; Q9CGT0_LACLA/1-68; Protein of unknown function (DUF739 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst MSYDYSSLLGKITEKCGTQYNFAIAMGLSERTVSLKLNDKVTWKDDEILKAVHVLELNPQDIPKYFFNLast
1 -40.000PF05339.11; Q9CGT0_LACLA/1-68; Protein of unknown function (DUF739 topsan)  ali  100  1MSYDYSSLLGKITEKCGTQYNFAIAMGLSERTVSLKLNDKVTWKDDEILKAVHVLELNPQDIPKYFFN 68
2 -21.300PF01381.22; O74027_METWO/12-69; Helix-turn-helix  ali follow..  24  2.......AAVNLTKQGYSQKEIAEALDMNRSTVSHYLNGRNL-SWKSIEVAKIITEMCPRDFLLL... 58
3 -18.500PF08667.10; Q7P0M9_CHRVO/4-177; BetR domain  ali follow..  11  3KSLFLVRLAQLLDATGIAERELRDLLGIDLSSANRKLKGGIAFNIEELAKVAKTIHCSADYLL..... 69
4 -17.800PF13443.6; C7PBR9_CHIPD/6-68; Cro/C1-type HTH DNA-binding domain  ali follow..  15  1......NLDVMMAKRKISLNELSERVDLTLSNLSILKTGKAKIRFSTLEAICRALDCQPGDILEY... 60
5 -16.400PF08965.10; X2GUQ4_9GAMM/1-117; Domain of unknown function (DUF1870 topsan)  ali follow..  7  1..MTNLELQAYRRFLMLKVSEASEYIGTDASTWHNWEKGTVPVPQYVVTAMQELKKLRTDKVNII... 64
6 -16.100PF13560.6; E2Q1W5_STRC2/16-79; Helix-turn-helix domain  ali follow..  6  4.....TELRQLRQAAGLKANQVVRRLIWSPSKLTRLETGENTVEPSDVIALCDMYGADPEKRALL... 64
7 -15.500PF13744.6; A9IKY1_BORPD/13-92; Helix-turn-helix domain  ali follow..  18  22......KLNELIDHRGLSQTEAAAITGMTQPKVSQVRRYKQNISLERLMQALVSLDQRVE........ 76
8 -15.200PF14590.6; Q086X3_SHEFN/5-170; Domain of unknown function (DUF4447 topsan)  ali follow..  7  6.GLNAIEIQCLRQSLGLTTEQVASITKASNEDVMAWESGEQEAPIPAQKKLLEIDDIIEMQVLNT... 69
9 -14.200PF13693.6; W0HVH8_9GAMM/4-78; Winged helix-turn-helix DNA-binding  ali follow..  15  1.DWHKADIIAALRKRGTSLAALSRAFGLSSTTLSNTLHRPWP---KGERVIAEVIGVPAAEI...... 58
10 -13.600PF07022.13; Q6K1G0_9CAUD/16-169; Bacteriophage CI repressor helix-turn-helix domain  ali follow..  14  4.....ERLMSAYGVK--MQKDLADLLGIAKHSVSGWVQRDA-IPGNVIVRCCLDTGADINWLV..... 58
11 -12.300PF15943.5; YDAS_ECOLI/8-72; Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT  ali follow..  9  1.......FKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRVLCEEL...... 56
12 -10.900PF15731.5; A1VWM6_POLNA/1-131; Antitoxin component of bacterial toxin-antitoxin system, MqsA  ali follow..  18  72.....DYIARVRKKLDLDQRQAAEIFGGGVNAFSRYENGKTRPS-LALVKLLKVLERHPDLLNEV... 130
13 -10.700PF06322.11; NINH_BPP22/1-60; Phage NinH protein  ali follow..  25  1MTHTVKTIPDMLIETYGNQTEVARRLSCHRNTVRRYLYDK............................ 40
14 -10.300PF12844.7; Q03EQ2_PEDPA/10-80; Helix-turn-helix domain  ali follow..  13  2.....ERLQDARIKKGWTIEEVQFKLQISKRYLMALEAGENDYTQSLIKQYANLLEIDLGSRNLKS.. 68
15 -9.520PF02796.15; UVP1_ECOLX/144-189; Helix-turn-helix domain of resolvase  ali follow..  13  10...DINEMKILLADPEMTVGAVAKRFNVSRMTIYRYTTK............................. 45
16 -9.230PF16264.5; I6L8Y5_STRMU/3-213; SatD family (SatD)  ali follow..  18  163.......LQAGIYEEKFSHKKMAEKLDLSPSSFNKRLKSSGLKIYLRNKKVATTL............. 210
17 -9.020PF08822.11; B0USA4_HISS2/1-164; Protein of unknown function (DUF1804 topsan)  ali follow..  12  9.....ALVRRYYVFDRFTLEQSAQKADVSFGTARRWKA.............................. 41
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.