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Query: PF05379.11; RDRP_PVMR/991-1078; Carlavirus endopeptidase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RNGCVIESVAQALGTRNADILAVVEERCCEEVVESVQAGLGLNLHHVEIVLQCFDIVGHCNLGDKEITLNAGGKMPFCFDISDEHMSFLast
1 -59.300PF05379.11; RDRP_PVMR/991-1078; Carlavirus endopeptidase  ali  100  1RNGCVIESVAQALGTRNADILAVVEERCCEEVVESVQAGLGLNLHHVEIVLQCFDIVGHCNLGDKEITLNAGGKMPFCFDISDEHMSF 88
2 -17.600PF05381.12; POLR_TYMV/779-885; Tymovirus endopeptidase  ali follow..  12  2TLNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDT-IKRIDITHSHFS. 93
3 -14.900PF05413.11; A6BME9_9VIRU/841-932; Putative closterovirus papain-like endopeptidase  ali follow..  13  8KFDCLFVSIAEIIHKKPEEVMMFI-----PHVMDRCVSNRGCSLDDAKAICEKYEIKVECEGDCGLIECGTSGLSVGRMLLRGNHFT. 89
4 -11.900PF05415.11; RDRP_BNYVS/1285-1388; Beet necrotic yellow vein furovirus-type papain-like endopeptidase  ali follow..  9  6PNNCLVVAISECLGVTLEKLDNLMNAVTLDKYHAWLSKKSPSTWQDCRMFADALKVSMYVKVLSDTYEVDGAGSSVTLHLVSDGHFI. 102
5 -9.300PF05414.11; POLG_ASGVP/621-698; Viral domain of unknown function (DUF1717 topsan)  ali follow..  21  6......................LVNEDISDELLDCIEEDKGLSHEMIEEVLITKGLSMVYTSDFKEMVLNRKYGVNGKMTIKGNHCEL 74
6 -7.220PF08320.12; F9XHK6_ZYMTI/286-494; PIG-X / PBN1  ali follow..  12  21KDSCAYWTLPSYLFIDRYQLSDSLFLDSQNLVSLRSLDGE-QDLEAPDWVIRRWGSSALLELAHTKVTDTAPSKNDWIVTVP--HLRY 109
7 -6.810PF14113.6; A1TV42_ACIAC/38-175; Type VI secretion system (T6SS), amidase effector protein 4  ali follow..  11  2DNQCAIR-LGAALEKSGVSFKSFRGPRCEQELADWLNTKPFAHCPTSIQV-EGKSFHKKIAARKGIVFFKDYWMRDGEKSPTGDHIDL 99
8 -6.790PF03320.13; I3TLZ2_TISMK/8-316; Bacterial fructose-1,6-bisphosphatase, glpX-encoded  ali follow..  15  142.....LKSLAKAKGVEISDLTACILNRPRHAELIAKVREAGVRIQLIGDGDVAGVIATARPDTGIDIYMGSGGAPEGVLAA....... 217
9 -6.470PF18545.1; W0JWR0_9EURY/36-109; Halobacterial output domain 1  ali follow..  7  9....VVAVVAAVDDRDPGELTPLHFVIDTEALDDLFTETAAEGLRNGNLSFSYEGFDVTAFSRGTIEI.................... 72
10 -6.320PF16008.5; B3MVP6_DROAN/72-340; Domain of unknown function (DUF4778 topsan)  ali follow..  12  10VHKHIILSMAITLNRPPDVVLDFLYNLSMQNFRNILEPFRGYPAGPCNVPFANGNICTQYMS-----IFDTRGNVRNPFH........ 84
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.