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Query: PF05454.11; F7EI21_XENTR/596-887; Dystroglycan (Dystrophin-associated glycoprotein 1), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VKFHAKFHGDHNAVINDINKKILLVKKLAFAFGDRNSSSITLHNITKGSVVVDWTNNTFPVEPCPVEQVEGVGKKIYDERGSPRQHFVNAVEPEFKLLNVSLSFSGSCKHKKFRYIPMRAEEPIPTAVAPTVAVDRNLEKRSEDDVYLHTVIPAVVVAAILLIAGIIAMICYRKKRKGKLTIEDQATFIKKGVPIIFADELDDSKPPPSSSMPLILKEEKAPLPPPEYPNQNVPETIPLNQDSLGEYTPLRDEDPNAPPYQPPPPFTAPMEGKGSRPKNMTPYRSPPPYVPPLast
1 -110.000PF05454.11; F7EI21_XENTR/596-887; Dystroglycan (Dystrophin-associated glycoprotein 1)  ali  100  1VKFHAKFHGDHNAVINDINKKILLVKKLAFAFGDRNSSSITLHNITKGSVVVDWTNNTFPVEPCPVEQVEGVGKKIYDERGSPRQHFVNAVEPEFKLLNVSLSFSGSCKHKKFRYIPMRAEEPIPTAVAPTVAVDRNLEKRSEDDVYLHTVIPAVVVAAILLIAGIIAMICYRKKRKGKLTIEDQATFIKKGVPIIFADELDDSKPPPSSSMPLILKEEKAPLPPPEYPNQNVPETIPLNQDSLGEYTPLRDEDPNAPPYQPPPPFTAPMEGKGSRPKNMTPYRSPPPYVPP 292
2 -12.400PF12273.8; K1X614_MARBU/45-169; Chitin synthesis regulation, resistance to Congo red  ali follow..  12  3........................................................................................................................................................VALILVVIFFLLMGYLFSITRRRRQRGLA------------PMYGTGWIPGTGPKPPQGQWADGRNGGPSHYVAPPPPYMGNQATGTTFNSNDGYYGGHANQAGGAGIELQQPQSSYQPQRGGDNVYTAPAGPSP..... 125
3 -9.870PF15102.6; TM154_HUMAN/24-165; TMEM154 protein family  ali follow..  11  15............................................................................................................ERPNKVTIPSTFAAVTIKETLNANINSTNFAPDENQLEFILMVLIPLILLVLLLLSVVFLATYYKRKRTKQEPSSQGSQIFEEDTPSVMEIEMEELDK...................................................................................... 128
4 -9.620PF13965.6; H3B1E4_LATCH/113-763; dsRNA-gated channel SID-1  ali follow..  8  11.................................PEDLDSVVIKVVSNKVYPCSVV--SVQDIVCPVYDLDHNVEQSMTKKAAITIQRKGFPDGKFYVVFVIKPEDYACGRSVPLSTIKGRGNHSHTWNLEQLKD-TIVPSIDERVYVEAIIFCFAVFFSFYFCALIIAFFHYIRIHKAEADGKYSPEDEGAGTLAASHPFASGMGEGSSYRAIDESSSTTGGSRTSPAEGARCRSYSDSSGEEDSDYDTLQHLDSDKNVLGTKVFLYVSDLARKEQRTVSKKYKI....... 267
5 -8.710PF12868.7; B8NBW3_ASPFN/561-699; Domain of unknwon function (DUF3824 topsan)  ali follow..  16  1..............................................................................................................................................................................KHRSRSRDLAEAALAATGVGYAAHKYTQRRERKKAEQERERPRFDEDARQDSYGEPYSPEPYQHTALPPQSSEHQY----YPNTNYFPPPPGSAPRPAGSTAPYNPADYPPPPVAVPP 114
6 -7.650PF10702.9; K0IXB7_AMPXN/21-141; Protein of unknown function (DUF2507 topsan)  ali follow..  4  32..................AQSFESIDQISEFFKKVGWGTLELIKEKRAEHIFKLQTRVITERHRLGIA-----TDYRLEAGFLAAAMEQILSFQCECVDEEKPRKNFVE....................................................................................................................................................................................... 117
7 -7.410PF16665.5; F7DNP6_ORNAN/476-588; Unstructured region on nuclear receptor coactivator protein  ali follow..  11  25.............................................................................................................................................................................................................SPRNRGSPKMAPHQFSPVAGLHSPMGSAPNAGGPSFSSSSLSALQAISEGTSLLSTLSSPGPKLDHSPNVPPAQPAKTGGQESKSPP 113
8 -7.410PF05510.13; B4G905_DROPE/2-405; Sarcoglycan alpha/epsilon  ali follow..  12  189...VIVHVGSVAQFSPRLKELQEEVRPLYKLPSCTYKRTSVQKIFENVGFKLDW---------C-----------------------------AFKMVGLESPTEIL-SGKQQNEQQPSGDEQLHNDRWMGITREDVPRRNYIDEFAFAFAIPGMIFAILIGMLSAVLCF-----QHQKFSDPHSEFFFAN----IFHICEESCAQAPSDSETDHESESSVFFESPISSTVQMVKCADQPLTTLKSLKDPNFLLDNTSMRSQSP............................ 403
9 -7.270PF11029.8; B7PCU4_IXOSC/14-160; DAZ associated protein 2 (DAZAP2)  ali follow..  15  19.....................................................................................................................................................................................................PASHSLPSGGGYWPQPQTTQPMDHAAKMYPAPGQGYGQAPPAPPQYAGASYPQQPVVPQANQTTVYHVPDAFDAGARFSANTPASIPPPPPGVMP 113
10 -7.190PF05640.14; U3JEN6_FICAL/1-206; Na,K-Atpase Interacting protein  ali follow..  12  16LQLVAALERQIFDFLGYLANFLHIMAVILGIFGTIQYRSRYLMMYAVWLVLWVGWNAFIICFYLEVGRLSQDRDFIMTFNTSLHRSWWMENGPG-------------CLVTPVLNSKLAPEDHHVITVSGCLLDYQ---------EVVSSATQIFLALFGFVYACYVSKVF--------LEEEDSFDFIGGFDSYGYQAP---QKTSHLQLQPLYTS........................................................................... 206
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.