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Query: PF05461.11; M3YMB0_MUSPF/26-333; Apolipoprotein L, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TVRREELDTLLSDQESWERFVAEATLSREEAEALREVLNELQRTMDMEADEQEARESFLHQFPELKLKLEERIRKLHELADEVDRVHRDCTIANVVANSTGVVSGLLSILGLGLAPVTAGASLALLATGMGLGVAATVTQVSTSLVEDSSESSAKAQASHLTSTDFDKGEVIAKVLHDRIPQIYSLTGTCFRALQNIANNVRAINLAKVKPRLVVNARRLMTSQRISVRGGRQVQKAFGGTALAMTKGARIMGAVTAGLSLAMDVVNLVKDSEHLQKGAKTESAEDIRQQARELESKLKKLSEIYEILLast
1 -91.000PF05461.11; M3YMB0_MUSPF/26-333; Apolipoprotein L  ali  100  1TVRREELDTLLSDQESWERFVAEATLSREEAEALREVLNELQRTMDMEADEQEARESFLHQFPELKLKLEERIRKLHELADEVDRVHRDCTIANVVANSTGVVSGLLSILGLGLAPVTAGASLALLATGMGLGVAATVTQVSTSLVEDSSESSAKAQASHLTSTDFDKGEVIAKVLHDRIPQIYSLTGTCFRALQNIANNVRAINLAKVKPRLVVNARRLMTSQRISVRGGRQVQKAFGGTALAMTKGARIMGAVTAGLSLAMDVVNLVKDSEHLQKGAKTESAEDIRQQARELESKLKKLSEIYEIL 308
2 -8.740PF15984.5; Q8XQX4_RALSO/108-304; Bacterial collagen, middle region  ali follow..  12  1...........................................................................................LPLVPSSAQSGLGGVVENLGATVSALGAGVQDGLGSIGSNPNPIGTTVASTGNVVTGV------NTVTSAGTLVGGLGTGQLSPLAPVTTPLAGALTQVGQAVTNAGTTLGTTLSTGPVEQLTQQLSTAIVPLTSQIIGGTQTVGATTGMGTPANSLLGTLGGAIANGGSTLT-------------NANVPVVSNVGGVVGAVGNTVASLGGV.... 195
3 -8.230PF16013.5; B5DR01_DROPS/112-408; Domain of unknown function (DUF4781 topsan)  ali follow..  11  79......................................................................................HRILNVGDKVATVGSLVASVPVAAALAVP-----VGGPIILAATAVGVATAAYSTLRSANRLYDRVRHGQSTSITDSEARGQWLGVAGVVGLGATGATRLMSRVAAAGTEVNCAAQFAVKGINVSSIVISGTGVANGVYDLYLKVGDDQTLSKLDILQIASSLVIFTHSINNLRIASKVSNRPTLMRALRNQTRKVVRQISQESIKLHNGSDSGKFDIVRTF 296
4 -8.080PF13168.6; Q9Q8U4_RFVKA/922-1114; Poxvirus B22R protein C-terminal  ali follow..  18  2..........................................................................................VIVNLLSSVLSQIGGTISITGS--------NSPTVAVAGLALQGISGLIDAATSIYHILTGSQPYKDAIEKFSNYANYMSRTEA...................................................................................................................................... 78
5 -7.130PF05802.11; C5B9R0_EDWI9/34-192; Enterobacterial EspB protein  ali follow..  11  1.......................................QLNELMVQLGELFGKLRDVLRQYQQAQQSNKMQKTAFETRVDSIDKDFQ----AKQAQAVAQIVGGIAQTVGGGFGEHTISTGLNNMTQGIVGVGYANDLTRQSQEEQALYQHGMADQLLKRAEETKEKALKVSGDLREILATLTQAHEHLSSSVR................................................................................................................. 158
6 -6.910PF11981.8; E1VNR8_9GAMM/171-458; Domain of unknown function (DUF3482 topsan)  ali follow..  20  61..AALLVAELLVDCAAARH-----SVAPEAEEEAEAKLF-----VQVREREQKCVEALLDLYAFQADDARLHTLPLSEGRWGDDLFNPETLRALGIRVGSGMAAGALA--GAGIDVMAGGLTLGTTAIGALVGGGAQ........................................................................................................................................................................... 184
7 -6.900PF02009.16; Q8I2C8_PLAF7/31-368; Rifin  ali follow..  15  7SLCECELYSPTNYDSDPEMKRVMQQFEDRTTQRFHEYDEKMQSKRIQCKDRCDKEIQKIILKDKLDKELTEKFATLKSLADKVEKLKCTQNLGGIVAPSSGVLGGIGEFE-AALAAAKEFAEKAGAAQGAIAGNAHGMKIVIYYLKDWGIQQCCPEIFNPFVAKNITEVANISGDIIAKYSAKCADTVTGGNSMCKAFCLKLGTNIAHGGRTLSVDHIVQLKIKGLVERADQAVAHVTKTTSETVTAAIKATSINASIIAIIVIVLILVIIYLILRYRRKKKMKKKLQ-YLKLLKE............ 338
8 -6.670PF15475.6; H3CAE9_TETNG/29-118; Transmembrane protein C12orf23, UPF0444 topsan  ali follow..  26  18...........................................................................................LFSVTKGVVGAVGGVAWVGGRSLE-ITKSAVTTVPLMGVGLAVAGGVSTVGSSVAGKLPFTAKKDKA...................................................................................................................................................... 90
9 -6.640PF01723.16; CHBE4_BOMMO/1-191; Chorion protein  ali follow..  17  88............................................................................................TGLGIASENVYEGSVGVCGNL--PFLGTADVEFPTAGLGGIDYTCGDGAVGITVENA............................................................................................................................................................... 144
10 -6.510PF13988.6; D8MQN7_ERWBE/128-293; Protein of unknown function (DUF4225 topsan)  ali follow..  11  1.......................................................QNLKQEHEYLTIQDRMLRSGHAVVSASVQFYHEHEKIIGYIIDGIGVVVGGLQMAGATLIAGSMATGNVIGVVAGSSLVLSGAGSTIESAEKLLGRANPTNFMRNAYEDAAEFM........................................................................................................................................... 115
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.