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Query: PF05703.11; M4FF47_BRARP/18-307; Auxin canalisation, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PETPLEPMEFLARSWSASALEVSKALTPSDPQILLSKTEEEPILRDGDTEESGLVSGNPFSFASSETSQMVMDRILSQSQEVSPRTSGRLSHSSSGPLNGSLTDSPPPESDDIKQFIRTNNSSLNNINCQFRSTATTPGPITATATQSKTVGRWLKDRREKKKEETRAHNAQIHAAVSVAGVAAAVAAIAAATAASSSAGKDEQMAKTDMAVASAATLVAAQCVEAAEVMGAEREHLAYVVSSAVNVRSAGDIMTLTAGAATALRGVATLKARAMKEVWNLASVIPMDKGLast
1 -96.200PF05703.11; M4FF47_BRARP/18-307; Auxin canalisation  ali  100  1PETPLEPMEFLARSWSASALEVSKALTPSDPQILLSKTEEEPILRDGDTEESGLVSGNPFSFASSETSQMVMDRILSQSQEVSPRTSGRLSHSSSGPLNGSLTDSPPPESDDIKQFIRTNNSSLNNINCQFRSTATTPGPITATATQSKTVGRWLKDRREKKKEETRAHNAQIHAAVSVAGVAAAVAAIAAATAASSSAGKDEQMAKTDMAVASAATLVAAQCVEAAEVMGAEREHLAYVVSSAVNVRSAGDIMTLTAGAATALRGVATLKARAMKEVWNLASVIPMDKG 290
2 -6.730PF16930.5; W0J0S5_9BACT/41-612; Putative porin  ali follow..  17  18...............................................................................................................................................................TQEQAEGLVRQAEAEAAAARETARLAALAHAPGGAATVTASSPAGVPSGLSPVTTTTPSGGVRVTYVPESVRQQREDIRQDVMRQAREENWADPREVPAWTKKRLTG---VRFR................. 131
3 -6.580PF04549.14; CD47_HUMAN/144-292; CD47 transmembrane region  ali follow..  20  22..........................................................................................................................................................LKYRSGGMDEKT--------IALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHYYVFSTAIG-----LTSFVIAILVIQVIAYILALCIAACIPMHGPLLIS................... 130
4 -6.250PF03188.16; ACFR2_ARATH/50-183; Eukaryotic cytochrome b561  ali follow..  10  17...................................................................................................................................................AMLAYKSVQGTKNLKK--------LVHLTLQLTAFILSLIGVWAALKFHIDKGIENFYS-LACLFLFAFQWAAGFVTYWYPGGSRNSRASLMPWHVFLG------ISIYALALVTATTG........................ 126
5 -6.000PF07155.12; Y1634_STRA5/4-171; ECF-type riboflavin transporter, S component  ali follow..  13  6................................................................................................................................................................................VVATGIGAALFIIIGMLVNIPTPIPNTNIQLQYAVLALFAVI-----------YGPGVGFFTGFIGHAL-----KDSIVLVSGLLGLMIGFFAKKLAIQLSGMTKKDLL..... 107
6 -5.880PF02653.16; Q98IE3_RHILO/52-351; Branched-chain amino acid transport system / permease component  ali follow..  13  176.................................................................................................................................................LTRSRFGNWIGEANAARNLGVPVARTKI-TLFVMTALAAALFAAIQVLSADTLRGTQKEFEAIIAVVIGGTLLTGGYGSAIGAMFGA----IFGVVQMGIF------YTGIDTDWFKLFMGAMMVIA.................. 299
7 -5.710PF15324.6; H9GLI0_ANOCA/127-1404; Hedgehog signalling target  ali follow..  14  4......................................................................................................................................................ISQYDAGQKEAVRAKQRVQNAPVFKEVKVQLLGNT----SNKKDSPKSSHSEMDSAATIAAATAAAIASTAPLLKVQSDFEAKVSSVSKILNK---------LQETDRRLQLAVERQSSLKAPTRERSPCHQRFGELEK. 132
8 -5.640PF05123.12; D7DRS7_METV3/7-271; S-layer like family, N-terminal region  ali follow..  13  1...........................................................................................................................................................................KAGAIAGSTMLASAMATGVFAIEQIGDVEDVDGNSNVDIVVGSNAK--------AGDVISA--AEITAKIGNLLYTEQSSETGSAKLSIKA............................ 88
9 -5.550PF02635.15; V6F6H7_9PROT/1-117; DsrE/DsrF-like family  ali follow..  16  15...............................................................................................................................................................QASDSAYRFAKAALDKGHEIYRVFFYYDGVLNATKHSEPPSDDRNVIKNWQKLAEDHKVDLVVCVAAGLRRGIVEDSLA----PGFRISGLGQLIEAGIQADRMV.......................... 115
10 -5.470PF02308.16; Q4WGH5_ASPFU/19-148; MgtC family  ali follow..  15  1................................................................................................................................................................................LLVATGLSSIIGIEREWRHKSAGLRTNTLVGIGAALFMLISKLGSFDVLARGLVVLDPSRIAAQIVSGIGFIGGGIIFKLTTAAGVWLSAAVGA.................... 101

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24