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Query: PF05786.14; G3J5P2_CORMM/14-857; Condensin complex subunit 2, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RSVSGSLNSRSRDRIPLNDDAEERGKRINSRKALHDKQINQLKAAASGSRKSSLGIEDIENAAPGSNAGTPRASRGLDLSDDPIMINGVNLTPVKRVPILANFEEWMKMATDNKINATNSWNFALIDYFHDMSLLKEGDGVNFQKASCTLDGCVKIYTNRVDSVATETGKLLSGLADSNSKKKADGEGGTGEESDDEVDEDGNVKKKPKKKSQRSEATLAPSFTSLQLKKFELEFSVDPLFKKASADFDEGGAKGLLLNHLMIDSQGRIVFDSSDDTDTPGIAGGNKAQEEVNVDLDEDEENLESEISQLQSDVEALRIEEPEPEDDPRDIEIDLTGLRQRYFPNLSRLDDFDVCPSLKNFELGDPSGSMDIPFLKAPEDWRGDEDGRLPGAFGDNSGMLIDGDAPMGFDDDDLGLGSFDIGDDVAFGEGGEAWARDAALQPQMRVYDNPMAGEEGAEEDEYDENGDYVISISNPQNAEKMHQDILGFFDQALQKNWTSAEHWRIRKIKDTNKPSSDAPKKRKEKEPFEVDFGSALNSSLTDALYTRAASNTSISLAKKDWKSKSRNLLPDDKHFNSKSLLSLFLKPKARLIQRSTGNPQSARRMFGGGSANDMDNQPAGELDEAFWAQQKAPEETALPGGDYDANFFQDDALPFPGGGGDDDDDDDMEFADAQEHLAGAGADMGMTENVGGVTAMFGGDTMANPMGAFGDTLVAATRRVRPEYVQYARVAKKVDIRRLKDEIWKGMGLEALQTPPAMAPPEPASRRSLSEQQPQPPQQPPEDAATNPTLKFTKVMNNLQRVYPKPVMNDISTSYCFISLLHLANERGLIINTTEDLKELEIRKLast
1 -221.000PF05786.14; G3J5P2_CORMM/14-857; Condensin complex subunit 2  ali  100  1RSVSGSLNSRSRDRIPLNDDAEERGKRINSRKALHDKQINQLKAAASGSRKSSLGIEDIENAAPGSNAGTPRASRGLDLSDDPIMINGVNLTPVKRVPILANFEEWMKMATDNKINATNSWNFALIDYFHDMSLLKEGDGVNFQKASCTLDGCVKIYTNRVDSVATETGKLLSGLADSNSKKKADGEGGTGEESDDEVDEDGNVKKKPKKKSQRSEATLAPSFTSLQLKKFELEFSVDPLFKKASADFDEGGAKGLLLNHLMIDSQGRIVFDSSDDTDTPGIAGGNKAQEEVNVDLDEDEENLESEISQLQSDVEALRIEEPEPEDDPRDIEIDLTGLRQRYFPNLSRLDDFDVCPSLKNFELGDPSGSMDIPFLKAPEDWRGDEDGRLPGAFGDNSGMLIDGDAPMGFDDDDLGLGSFDIGDDVAFGEGGEAWARDAALQPQMRVYDNPMAGEEGAEEDEYDENGDYVISISNPQNAEKMHQDILGFFDQALQKNWTSAEHWRIRKIKDTNKPSSDAPKKRKEKEPFEVDFGSALNSSLTDALYTRAASNTSISLAKKDWKSKSRNLLPDDKHFNSKSLLSLFLKPKARLIQRSTGNPQSARRMFGGGSANDMDNQPAGELDEAFWAQQKAPEETALPGGDYDANFFQDDALPFPGGGGDDDDDDDMEFADAQEHLAGAGADMGMTENVGGVTAMFGGDTMANPMGAFGDTLVAATRRVRPEYVQYARVAKKVDIRRLKDEIWKGMGLEALQTPPAMAPPEPASRRSLSEQQPQPPQQPPEDAATNPTLKFTKVMNNLQRVYPKPVMNDISTSYCFISLLHLANERGLIINTTEDLKELEIRK 844
2 -14.300PF06278.11; I3JKS1_ORENI/11-122; Condensin II complex subunit CAP-H2 or CNDH2, N-terminal  ali follow..  17  7...................................................................................................................ELTKNWEIDLASELNDYLDEGGKTRLNFAEAALLIQGSACIYSKKVELLHSLVFQTLEYINDKNKKRNKQATESQEGDGRAASSHDADNL............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 105
3 -9.610PF16858.5; E9GRW6_DAPPU/321-617; Condensin II complex subunit CAP-H2 or CNDH2, C-term  ali follow..  14  174.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QFMAEYTASAKEFVTSTESRRVQA--WDMIQPRLREAEMRRD--------DIHLYGSRIIEEFGAAAPIGSQCAFTKIVHD-------QPKNEVA---YFLATLQLANAYNVEIQLQDTLDGVELK. 285
4 -9.260PF08568.10; Q6CFU3_YARLI/1-673; Uncharacterised protein family, YAP/Alf4/glomulin  ali follow..  12  1..............MQLTDDHKKDLEKGEELKGKEEHTVAGEDEEDVNHGADDSEDAEDEDAEDENDYTELDVDIVCQFIKDAAREAEKTGDYISYATVIDIHVKILTLRTNPKICEEIGWDL-LLPYFNV-FNDGLEGHPTFYPLIMLFSTLAEYGNPK--ELFLKTVETLSTLTCDRAPENDKLKFKQAESLRKFEVCK--SSCMKKIKTQYPSRFLASAASAINAALFRHFPLIVGILARRVYVFDEQAKSAKILQSL....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 296
5 -7.860PF02616.14; P74212_SYNY3/16-259; Segregation and condensation protein ScpA  ali follow..  11  106.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QRRRVTLAELIDQIEAIAVEIEKSEQKPKRVKRARPQSRREALQIITELAHQENLPHRSWVDLDTLLHCWHHHLDPDKLPD-DKVGVFWALLLLSSQSKVSLAQEEFYQDLQVQI 243
6 -7.430PF04825.13; G4TL32_SERID/3-106; N terminus of Rad21 / Rec8 like protein  ali follow..  11  18.........................................................................................................WLAAHYERKLSKTQTLQTDIGQSAKAIESRP----LALRISGQLLLGVCRIYSRKAKYLLDDCNEALVKIKMAFRPGVVDMTEEQ.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 98
7 -7.410PF02691.15; VACA3_HELPX/43-1023; Vacuolating cyotoxin  ali follow..  12  786......................KAWKNTGINKTANNTTIAVNLGNNSTPTNSTTDTTNLPTNTTNNARFASYALIKNAPFAHSATPNLVAINQHDFGTIESVFELANRSSDIDT-----ANSAQGRDLLQTLL----------------IDSHDAGYA-RIDA--TSANEITQQLNAATTT----------------NNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRKHTN-HIDSFAKRLQALKDQ.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 978
8 -7.410PF15265.6; F6Y0I7_ORNAN/3-538; FAM196 family  ali follow..  11  319.GQSTHLGSASDWVTLSNDNQGLITLAAGNASKSAPSCQGEMEKNSTQSDAPEFKTGLESFHIQPSLPKKEIKAQTNKEIREINQIHLAHGELCDLQGRLQSVEESLH-SNQEKIKV-------LLNVIQDLEKARALTEQDLNNCSTCQNTACIIYSVEYD-FRQQEGRFHQVLKTLDQVEQIPEMSPPQQVPVDPPVPEKQDIRRKSKKMKK...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 530
9 -7.090PF03186.13; B0TIK7_HELMI/19-324; CobD/Cbib protein  ali follow..  106..........................................................AGRCLAEAALEIKGLLEQGDLVEARRKLSWIVGRDTVNLGESEIVRATVETVAENTVDIPGAYAYKAINTLDSMIGYRNERYLWFGRFAARLDDAANYIPARLTGLSMVLAATMMGFPFKRMIAAWREDARRHPSPNSGIPESIMAGALGVQ-QPSHRATMGRPLVPLEARHIGQAVQV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 305
10 -6.990PF03566.13; Q80IX5_PRVFL/54-754; Peptidase family A21  ali follow..  12  1.............................................................................................................ASANQAGKKRTRSIR-LDTMHRVV--------------VSVD---------VDSLTTLMGNIMGSLLTAGDVEKNPGPQMTRENKAPNMSVRAQNVTVSNSRRRRRKNRKPRKQVE----------ILKPQLLPGESVAPSGGVHEICAQSIDPSEGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 151

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 7 5 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.