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Query: PF05911.11; W1PWE2_AMBTC/32-946; Filament-like plant protein, long coiled-coil, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KDDIVKQHSKVAEEAIAGWEKAEAEAASFKQELDGVVRQKVAAEERIVQLDAALKECTRQLRHVREEQEERIHDAIMKTTRDMDKVRIEIEEKLSETSKRLIQVTADNNQLHKALQVQEKLIEEISERKSQAEADFNALLSRLDSAEKDNSALKYEVCMLEKELEIRNEEREYNLKSSEASRKQHLESMKKIAKLEMECQRLRLLVRKRLPGPAALAQMKNEVENLGRDAFDQRKKKWNASHGSALIVRDYSLSDDAQEAANKRISILTERLWEMEEETKILKETLTKKNSELQSSRTMCARTVSKLSQVEAQLGVFLKGENCLELMRSPISHDISLSSISEDGGKEDEASCAESWASALISELEHFKKESPNVPPSCRSLGATELSLMDDFVEMERLAVVSAGNPQECMHPNSTTHGNGGENGHFKTEQSEPSSEVTGKELVPYSDGHKGVDNESQNLILKYPSKEKFSSWLHDLLKNILQDRVSQKCLDDILEEVRIAVTVYLYSLSEEAIDLNKCSSNSETLDSPIVNSHISWKSPLAPPCMNLLDGVCGTHLFFKEGNKHSISPRLNKAISKIIELINGLSPTILTDYNDNQFAFNKGDQSLPYKSPNANTGYTMRVFQWQSTEVKAVIQKFSQVCNDLLQGNADLDRFAVELSATFDWIVSHCFSLQDVSNMKDAIKKNLHWDEQSCSDGELEDEAHHTPRSKDSKHMIQKSPSDSSASQDKEDVEHKLREENERLNLEILNVTSEKKYLEHSLQVATETNESLKVQLQDLEQNIANIQEELAAMKESKGLIEDQMENHKLLNEDLDTQLSVAKVELNEAHQKFTSLQVELEDKKNCSEELEATCLELQLQLESVANKKLSKPDMDGEEMQMRTNWEISAASEKLAECQETILNLGKQLKALAAPHDAALLast
1 -190.000PF05911.11; W1PWE2_AMBTC/32-946; Filament-like plant protein, long coiled-coil  ali  100  1KDDIVKQHSKVAEEAIAGWEKAEAEAASFKQELDGVVRQKVAAEERIVQLDAALKECTRQLRHVREEQEERIHDAIMKTTRDMDKVRIEIEEKLSETSKRLIQVTADNNQLHKALQVQEKLIEEISERKSQAEADFNALLSRLDSAEKDNSALKYEVCMLEKELEIRNEEREYNLKSSEASRKQHLESMKKIAKLEMECQRLRLLVRKRLPGPAALAQMKNEVENLGRDAFDQRKKKWNASHGSALIVRDYSLSDDAQEAANKRISILTERLWEMEEETKILKETLTKKNSELQSSRTMCARTVSKLSQVEAQLGVFLKGENCLELMRSPISHDISLSSISEDGGKEDEASCAESWASALISELEHFKKESPNVPPSCRSLGATELSLMDDFVEMERLAVVSAGNPQECMHPNSTTHGNGGENGHFKTEQSEPSSEVTGKELVPYSDGHKGVDNESQNLILKYPSKEKFSSWLHDLLKNILQDRVSQKCLDDILEEVRIAVTVYLYSLSEEAIDLNKCSSNSETLDSPIVNSHISWKSPLAPPCMNLLDGVCGTHLFFKEGNKHSISPRLNKAISKIIELINGLSPTILTDYNDNQFAFNKGDQSLPYKSPNANTGYTMRVFQWQSTEVKAVIQKFSQVCNDLLQGNADLDRFAVELSATFDWIVSHCFSLQDVSNMKDAIKKNLHWDEQSCSDGELEDEAHHTPRSKDSKHMIQKSPSDSSASQDKEDVEHKLREENERLNLEILNVTSEKKYLEHSLQVATETNESLKVQLQDLEQNIANIQEELAAMKESKGLIEDQMENHKLLNEDLDTQLSVAKVELNEAHQKFTSLQVELEDKKNCSEELEATCLELQLQLESVANKKLSKPDMDGEEMQMRTNWEISAASEKLAECQETILNLGKQLKALAAPHDAAL 915
2 -11.900PF15921.5; G5BJQ7_HETGA/1-1111; Coiled-coil domain-containing protein 158  ali follow..  11  531.....LQELQHLKTEEEHLQHAQTECEALRLQMAGKDKVIEILRQQIENMMQLVGQHGRTAGAILVEKAQ-LEKEINDRRLELQEFKVKKDAKIRELEAKVSDLELEKVKLVNAGSERLRAVRDIKQERDQLLNEVKNSRSELNNLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGADGHAVKVAVGMQKQ------ITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLK..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 839
3 -10.900PF02463.19; SMC_BACSU/2-1172; RecF/RecN/SMC N terminal domain  ali follow..  10  146.EEILSSKAEIFEEA-AGVLKYKTRKKKAENKLFET-------QDNLNRVEDILHELEGQVEPLKIQAS---------IAKDYLEKKKELEHDIEELHGKWSTLKEKVQMAKEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVKEKQQALSLHNENVEEKIEQLKSDYFELLNSQASIRNELQLLDDQMSQSAVTLQRLADNNEKHLQERHDISARKAACETEFARIEQEIHSQVGAYRDMQTKYEQKKRQYEKNESALYQAYQYVQQARSKKDMLETMQGDFS--KAKERLGGIRGAVLELISTEQKYETAIEIALGASAQHVVTDDEQSARKAIQYLKQNSFGRATFLPLSVIRDR-----------------------QLQSRDAETAARHSSFLGVASELVTFDPAYRSVIQNLLGTVLITEDLKGANELAKLL-------------------------------GHRYRIVTLEGDVVNPGGSMTGGAVKKKNNSLLGRSRELEDVTKRLAEMEEKTALLEQEVKTLKHSIQDMEKKLADLRETGEGLRLKQQDVKGQLYELQVAEKNINTHLELYDQEKSALSESDEERKVRKRKLEEELSAVSEKMKQLEEDIDRLTKQKQTQSSTKESLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSEMSSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEMKRLYKQKTTLLKDEEVKLGRMEVELDNLLQYLREEYSLSEEARKRVKLIKLAIEELGT-DEFERVNERYKFLSEQKEDLTEAKNTL---FQVIEEMDEEMTK......... 1030
4 -9.840PF15818.5; G3T452_LOXAF/26-1066; Coiled-coil domain-containing protein 73 family  ali follow..  14  6KTSLLEEELRMRREAETQYEKIIVETQELKWQKETLQNQKETLAKQHEEAMAVFKKQLQKMCALEEEKEKEI-EGLKETLKALQVSKYSLQKKLSEMEQKVLHFLAKEDHHKQIITGQFGLVKENHEKLERNVQEAIQLNKRLSALNKKQESLKKELKKVTSDLKVTCQYKMGEENTNLTIKERKFQELQERLNMELE-------LNKKI--NEEISRIQEEKQNVIISFQHMQQLLQQQTQANAEMKAELKVLKENNQTLERDNELQREKVRENEEKFLNLQNEHEEAQGTWKKHVEELNGEINEIKN.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 338
5 -9.500PF10168.9; I3KZS6_ORENI/8-718; Nuclear pore component  ali follow..  10  520...................AGDKDTSPPPPECLELLSRTQVFREEYILKQDMAREEMQRRVKLLTGQKNKQLEELCREERKSLREAAERLADKYEDAKYRQETIMNRVKKVLCSLQSQLP---ILSNSEKEMKKELQTINDQLKHLDNCIRQVNMKMEYQKTQVD----KDMPGTRARVSLNAPQKKVVQDV--LKEQGQQIGDMMKQ-------IKDIKNHFS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 711
6 -9.000PF09726.9; H2MT57_ORYLA/2-679; Macoilin family  ali follow..  18  401....................RLEQDIKKLKADLQASRQVEQDLRSQISSLERSIRTELGQLRQENELLQNKLHNAVQKKLKGEQEARATAEKQLAEEKKRITELETECKKLTMDIKLKEDQIRELEHKYKENEKDTEVLMSALSAMQDKTQHLE---NSLSAETRIKLD----AKRQLEIAQGQMIQKDQEIKDLKQKIAEVMAVM..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 637
7 -8.770PF05622.12; H2QW41_PANTR/12-710; HOOK protein  ali follow..  11  236....LQTQLEQLQEET---FRLEAAKDDYRIRCEELEKEISELRQQNDE----LTTLADEAQSLKDEIDRHSSDKVSKLEGQVESYKKKLED-LGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARSQLETQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRTERD---KETIEELRKLIRLQHENKMLK--LNQEGSDNEKIALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQAEDSVLLKKKLEEHLEKLHEANNELQKKRAIIEDLEPRFNNSSLKIEELQEALRKKEEEMKQMEERYKKYLEKAKSVIRTLDPKQNQGAAPEIQALKNQLQERDRLFHSLEKEYEKTKSQREMEEKYI.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 654
8 -8.660PF15254.6; G1T8F1_RABIT/39-892; Coiled-coil domain-containing protein 14  ali follow..  18  341..........LGEKALVA-EQEDSEIQRLITEVEACVSENIQVEIALA--NAHLRS--RQLRILKTKKTQSLNMSLQSQLQESLKNQELLQSKNEELLKVIENQKDENKKYTSIFKEKDQ---TILENKQQFDIEITKIKIELEEALVDVKSSKFKLDTAEKELGITLRQR------------------------DAEVARLRELTRT----QNSMAKLLSDLS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 559
9 -8.380PF15070.6; W5MC41_LEPOC/402-1036; Putative golgin subfamily A member 2-like protein 5  ali follow..  13  2.....................................................LMESVQQLKTERDQY-----------AAQLQEEGKVWKDRTEQLLSQVNSLSEEKERSMTQIQELENLVIELRNASALLSQEREDQAAP-TGPSENETALQEALGKLQQEKDDLSTQYQAQVRDNEQLSRLCQEQEERLLELERTVQRFSEDAVDRQQILESMQSDKATISRALAQNRELKEQLAELQNGFVKLTNENMELMSALQSEQHVKKELAKKMGQMQEELHQSREELEGKTQEARSLLEQRDQYLAHLQQYTAGYQQLVAEREE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 261
10 -8.350PF03999.12; B0WUV8_CULQU/23-592; Microtubule associated protein (MAP65/ASE1 family)  ali follow..  11  15.DEVYEESENRKTKILQTIDGLRREAANLRRLLKEDTVDGVDEQPGMPLHLITLDRSLEKMREKLKHRHELIEEYLFEQETLCEELGED-EATMCEFRTYLDNLRAEKLQRFDDIATMRRDIKIMRVNLHDLRCLHEQVGAWYDDLKENIDRARAKLANLWNVLAVSPSHVKRYEKYNEYTQ-------ATYDKLFAELDRCETLRRENIQ--NFIEQTRVEIVQWWDK-SNEERSRFSTFKSEVYNEDLLTLHEMELNDLKDFYRTNETIFALVEQRREMWDKMILLEQKSSDPSRKERKRISIQLPKIETRLLE....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 371

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.