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Query: PF05928.11; Q94KM1_MAIZE/1-207; Zea mays MURB-like protein (MuDR), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDFPPSKVVADAVEAARAAAVAASEARCAVFVAEKEAKAAVQFAAIVVDKVEAVKASSNVDLVDFKYHVNIKNSLRYAIQEMRRQYKLLHSVQKLCSTIPEVQGGKIGKVRGHLEHVCKELDKTSIVCEEDLETKNPTWDLYDNPSVDDEHPLDDDELGDGYSTEDPELWEMAFEDFKWEEIKANVSFEEHNRLINYRFEEINDRNMLast
1 -142.000PF05928.11; Q94KM1_MAIZE/1-207; Zea mays MURB-like protein (MuDR)  ali  100  1MDFPPSKVVADAVEAARAAAVAASEARCAVFVAEKEAKAAVQFAAIVVDKVEAVKASSNVDLVDFKYHVNIKNSLRYAIQEMRRQYKLLHSVQKLCSTIPEVQGGKIGKVRGHLEHVCKELDKTSIVCEEDLETKNPTWDLYDNPSVDDEHPLDDDELGDGYSTEDPELWEMAFEDFKWEEIKANVSFEEHNRLINYRFEEINDRNM 207
2 -8.270PF04089.14; H9G5B7_ANOCA/94-188; BRICHOS domain  ali follow..  15  4....SATVVYDFGNLVIGYRSWPEGKSCYLTRMDKENIQSLDEVVKVFQHTQPKPFLPTFKRGKEKETESDP-------QALADRSTLGTTINILCSSVP........................................................................................................... 92
3 -8.240PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain  ali follow..  20  57...........AVEAARAGAVVAGEVR----LASRSAQAAKEIKVLIENSVSRIDTGSTQ---------EAGETMKEIVNAVTRVTDIMGEIAS--ASDEQSKGEQVAQAVSEMDSV.......................................................................................... 157
4 -7.500PF03796.15; Q4K7N7_PSEF5/180-438; DnaB-like helicase C terminal domain  ali follow..  16  28...PSMGKTALALKFVHAALRQCSDNEVQVYSIEMPAQALLFRLISSIGHVDLTKLLKGKQLNGFGDRLVIDDGSSLTPAALRAKARRASRLQLMSAVGEENRNNEISVISRSLKALGKEMDCPVIALSQ-----------RSVEGRPNKRPVNADLRESGAIEQDADVIMFVYRDEYYHPESEHKGIAE................. 232
5 -7.010PF06532.11; D7A1B7_STAND/11-214; Negative regulator of sigma F  ali follow..  12  54......KFIYPLLLGIAGILAVERLGRPGGRAKRAARLAVAAVVAVLL--AQFMNSPPEMYGDLLMGSSAMLCPFYIVSLATPIYLGLLWALRGLAPTRLTVAGAGAGLLAGGMGAWI------AFHCGETAMPFLATW.................................................................... 182
6 -6.460PF03532.13; O50963_BORBU/3-255; OMS28 porin  ali follow..  9  104........VAKTIVAKCSGNKVVEMSK----AVQETQKAVSVAGEATKSPNNKELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVVKVAQGARDLTKV............................................................................. 247
7 -6.400PF01616.16; VP8_BTV10/35-227; Orbivirus NS3  ali follow..  17  15....MPTVALEILDKAMSNTTGATQT-------QKAEKAAFASYA------EAFRDDVRLRQIKRHVNEQILPKLKSDLSELKKKRAIIHTTLLVAAVV............................................................................................................ 96
8 -6.320PF14161.6; F110B_DANRE/11-121; Centrosome-associated N terminus  ali follow..  16  14....PLRILNKGPDYFRRQTEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPIKPQVL.................................................................................................................................................... 68
9 -6.270PF02741.15; A0B9N6_METTP/147-294; FTR, proximal lobe  ali follow..  19  49TPFPGGVVASGSKVGSRYKFLKASVAFCPSLKEQGVCALPENVTAGYEIVINGISREA------------IEEAMRVGIRAACTVPGVLRISAG---------GGKLGPHQFHLHRI.......................................................................................... 148
10 -6.260PF04307.14; Q3J7C8_NITOC/1-183; LexA-binding, inner membrane-associated putative hydrolase  ali follow..  20  1MD-----TLTHALSGALLARATASSKQPTGQLRVGERVLLGALAATFPD-SDFILRWTTDLLTYLNLHRGITHSVVMLP................................................................................................................................ 73
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.