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Query: PF06024.12; Q461Z4_9ABAC/3-123; Orf78 (ac78), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst LEVPYERMSLNQKKVEYIPLKLAVNDIDENGYRKPKQKANDDSDDNDNIINKSQTSPSLLANDFGNTNYIAYANATQGGILNVVLMALLSIFCVLVILYAIYYFVIIREREKRIVKPPYFILast
1 -110.000PF06024.12; Q461Z4_9ABAC/3-123; Orf78 (ac78)  ali  100  1LEVPYERMSLNQKKVEYIPLKLAVNDIDENGYRKPKQKANDDSDDNDNIINKSQTSPSLLANDFGNTNYIAYANATQGGILNVVLMALLSIFCVLVILYAIYYFVIIREREKRIVKPPYFI 121
2 -11.200PF12428.8; M0SAU6_MUSAM/200-316; Protein of unknown function (DUF3675 topsan)  ali follow..  12  31............................................NDSQILTLYPSERDVMHPHDDDYSALGMRTTVCCQSVAIIFMVLLVLRHTLPLAYSFTIFSLLVLRTAGILVPVFVL 113
3 -9.700PF15102.6; TM154_HUMAN/24-165; TMEM154 protein family  ali follow..  14  4.................................LENSGDTTVESERPNKVTIPSTFAAVTIKETLNANINSTNFAPDENQLEFILMVLIPLILLVLLLLSVVFLATYYKRKRTKQEPS... 88
4 -9.460PF15833.5; H2QMN5_PANTR/13-162; Domain of unknown function (DUF4714 topsan)  ali follow..  20  17...QRSRGPLAPNHVHEVCLH-QVESISDLHSGAGTLRPYLTEEARPWDELLGVLPPSLC------AQAGCSPVYRRGGF--LLLLALLVLTCLALALLAVYLSVLQSESLRILAH..... 120
5 -8.900PF11118.8; Q9K983_BACHD/2-77; Protein of unknown function (DUF2627 topsan)  ali follow..  17  35...............................................................................WPSLAIQFLAGFILFVAGFSFIGGFIFHRDRKNGKVAPRF.. 74
6 -8.800PF12273.8; K1X614_MARBU/45-169; Chitin synthesis regulation, resistance to Congo red  ali follow..  40  3...................................................................................VALILVVIFFLLMG----YLFSITRRRRQRGLAPMY.. 34
7 -8.500PF15706.5; W5Q6M8_SHEEP/854-937; Mature oligodendrocyte transmembrane protein, TMEM132D, C-term  ali follow..  29  28................................................................................LEIGMYALLCVFCLAILVFLINCVAAWKYRHKRF....... 62
8 -8.340PF11674.8; S5R146_9STRE/4-91; Protein of unknown function (DUF3270 topsan)  ali follow..  12  30.........................................................................NHRSAKLKELMFFARIALFAISTVVVSFFLLVL............... 62
9 -8.270PF04277.13; G2T321_ROSHA/146-226; Oxaloacetate decarboxylase, gamma chain  ali follow..  29  7...................................................................................TLMGMGTVFVVLILI-IIYCFRFISVIQNKA....... 38
10 -7.800PF05058.12; ACTA_LISMO/7-639; ActA Protein  ali follow..  13  527.....KQAETNKQSINMPSLPVIQKEATESDKEEMKPQTEEKMVEESESANNANGKNRSAGIEEGKLIAKSAEDEEEPGNHTTLILAMLAI------VFSLGAFIIIQLRKNN........ 633
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.