Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF06062.11; Y3616_PHOLL/1-117; Uncharacterised protein family (UPF0231 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MEYEFLLDVTGLVTSRFSMDHEAIGQWLNEEVKGDLAVIDKIASALAEIKGSERQWQLVGHEYTLLMDDEEVMVRANQLEFETDSMEEGMSYYDKESLAFCGTKDFIDMLADYRDFILast
1 -72.400PF06062.11; Y3616_PHOLL/1-117; Uncharacterised protein family (UPF0231 topsan)  ali  100  1MEYEFLLDVTGLVTSRFSMDHEAIGQWLNEEVKGDLAVIDKIASALAEIKGSERQWQLVGHEYTLLMDDEEVMVRANQLEFETDSMEEGMSYYDKESLAFCGTKDFIDMLADYRDFI 117
2 -12.100PF17346.2; F9QAN1_9PAST/1-135; Family of unknown function (DUF5376 topsan)  ali follow..  11  1MIVEFGYYDSFGKLAPILFDSSVITTYIST---NEINIVRLVLDDLKNLELTWEY--IGTEAFDAYIDHDRVKV----DLLDGYDEYDEIDDERDHTEYLIPRKELTYLLERWLAFI 117
3 -7.160PF11539.8; D0N966_PHYIT/51-244; Protein of unknown function (DUF3228 topsan)  ali follow..  11  77........LMSDYDARTEYELPVLGRWFPSHSVTPRVALDIILYSREQIIKENEAVDVPADPSHGDSPWGIVSIKAQDEDHE-TMMRNAVGKEQGGSGVPLDRGEYMKAVEYWRNHA 192
4 -6.880PF11435.8; E7KET0_YEASA/17-223; RNA binding protein She2p  ali follow..  15  98...........NYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKCADEDGTNIGETDNIFLQEILPVNSEEEFQTLSAAWHSIL 203
5 -6.870PF11548.8; G5C8S2_HETGA/461-549; Protein-tyrosine phosphatase receptor IA-2  ali follow..  10  14..............................SPEKGRQLMEDVARLLQVPPNIFEDIDVLGPAVTFKVGANVRNVTTADVARATADHKNQLADTSELKILQSGTGP............ 88
6 -6.720PF11300.8; L0F544_DESDL/8-135; Protein of unknown function (DUF3102 topsan)  ali follow..  13  34.............EAKSLVEHGEWGKWLEESVSYSQSTACRLIRICEEYGASLPDGSGTSNLAPVPNLTYTQALLLLGLPEGERE-----EFIAKNDVATMTKQELQQALRD..... 127
7 -6.080PF05153.15; Q5KEW8_CRYNJ/69-315; Myo-inositol oxygenase  ali follow..  14  88..........................................LGKLLCFFGADGQWDVVGDTFVVGCQFSDKIIYPDTFKANPDYNNPKLNTKYGVYEPNCGLDN---VLLSW.... 155
8 -5.870PF11895.8; K5V0I7_PHACS/290-368; Fungal peroxidase extension region  ali follow..  21  2............................................MASSFKAAMSKLAILGHNREDLVDCSAVVPVPKPAVNKPASFPAGTSPEDLQ--LTCTTEKFPTLTID..... 67
9 -5.770PF01654.17; D7BPD8_ARCHD/6-476; Cytochrome bd terminal oxidase subunit I  ali follow..  18  396..........................WILTEMGRQPWVVYPNMDMADKMAPSEMIKQLTDFGVSQNVVPAEVFIS.......................................... 444
10 -5.630PF15960.5; Q4V3S3_DROME/9-228; Domain of unknown function (DUF4763 topsan)  ali follow..  10  5..........GIPKLDEQEESDLVSSGIDPSDAEEETDLDAAYDELEEMKQRLITLRNK-----IIITNPDACQDLKIRDLWTPEGGELQELRDQKCQLICQLQEATQHLKDSQNEL 106
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;