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current user: public |
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| Query: PF06073.12; G2INC6_9SPHN/32-137; Bacterial protein of unknown function (DUF934 topsan), from PfamA32U |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . | |||||||
| # | Score | Template | Links and tools | %id | First | AVRIEPGEDARELLPHLERIALVEINFPSFGDGRGYSAARILREAGYTGELRAVGDVAVDQLSHMIRCGFDSFTPDKPLDPALVDATLALFPYRYQKAVDATRPVW | Last |
| 1 | -64.000 | PF06073.12; G2INC6_9SPHN/32-137; Bacterial protein of unknown function (DUF934 topsan) | ali | 100 | 1 | AVRIEPGEDARELLPHLERIALVEINFPSFGDGRGYSAARILREAGYTGELRAVGDVAVDQLSHMIRCGFDSFTPDKPLDPALVDATLALFPYRYQKAVDATRPVW | 106 |
| 2 | -9.630 | PF00834.19; RPE_SYNY3/6-205; Ribulose-phosphate 3 epimerase family | ali follow.. | 16 | 111 | GAVLNPSTPLDFLEYVLPVCDLILI--PGFG-GQSFALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSA............................ | 198 |
| 3 | -6.850 | PF01522.21; CDA1_YEAST/102-222; Polysaccharide deacetylase | ali follow.. | 10 | 1 | ..............DDVTSCFKLSQTFD---DGPAPATEALLKKLRQRTTFFVLGINTVNYPDIYEHILERGHLIGTHTWSHEFLPSLSNEEIVAQ.......... | 79 |
| 4 | -6.750 | PF05116.13; Q937E7_NOSP7/2-251; Sucrose-6F-phosphate phosphohydrolase | ali follow.. | 8 | 161 | ........................LDIVPHSSDKGQAMQFLRQKWKFAEQTVVCGDSGND-IALFAVGNERGIIVGNARKELLQWHNEHPAEHRYLASCFCAGGI. | 241 |
| 5 | -6.690 | PF13299.6; N1J6U1_BLUG1/776-947; Cleavage and polyadenylation factor 2 C-terminal | ali follow.. | 20 | 94 | .............................VGDLRLADLRKIMQTSGHTAEFKGEGMLLIDGTVIVRKTGTGRIEVES............................. | 141 |
| 6 | -6.440 | PF08866.10; G2SPT4_LACRR/1-111; Putative amino acid metabolism | ali follow.. | 14 | 7 | .AKLQGDTRTFELSPEIKRYSLRDVGFVESKGGK-FTLERSLDNQGFKFKMTVTSALDGFKMVTTTANGIKEVNVFKGNNAETHIEQLN................. | 98 |
| 7 | -6.420 | PF12617.8; K9TTM2_9CYAN/177-378; Iron-Sulfur binding protein C terminal | ali follow.. | 26 | 27 | ..........LSIAPWIERLKLVAISCPD-TDGRPMSLGQKVLAAGLPGYVQLAGGTNSYTVAKLQAVGM.................................... | 123 |
| 8 | -6.390 | PF13704.6; A5FVH5_ACICJ/191-301; Glycosyl transferase family 2 | ali follow.. | 19 | 1 | ...................................................KDEEDIIGQNLSHHYALGFRAFCVLNNMSTDNTREIVSRFR.............. | 41 |
| 9 | -6.390 | PF04319.13; K9T856_9CYAN/14-86; NifZ domain | ali follow.. | 17 | 8 | ....................QKVRVRKLIRNDGTGRDIGEVLAKKGDEGYVVSIGTYLQSYYIYAVH....................................... | 56 |
| 10 | -6.070 | PF08356.12; E5R159_ARTGP/221-307; EF hand associated | ali follow.. | 14 | 15 | ...IRRVLPDSVTPSGIDAKGFLHLNKLYVEKGRHETVWIILRAFQYTDNLSLQEEFLHPRFDVPPFSSAE................................... | 82 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67. |