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Query: PF06123.12; Q8E9F0_SHEON/61-487; Inner membrane protein CreD, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TLLKALTIGILSILALIPLGIIMDLTSDREMLYHSVVEEIGRSWGEQQTLSGPALVIPYRYFVMEEEVSNDGKTRREVKRTYQDELVILPKKLALDLDLKHDFRTRGIYQSLVYSAALKGQADFSLNSYDIPNLIALDNKNARLVFGVSSNQAIDKVEKIEIKGDSALLSGSLMSGTGLTTGGLEKGFNQGIQVSEASDFSVNFAMTLRGSQSISALPLGEQTLINIQADWPHPSFKGLLPAEREINAKGFTASWNISHLTRNYPQEFVKSNQSTLTEVVANAILFEPVTHYGKIDRSVKYGLLFIVLTFIMLFIFELGQKTSLSIVQYILVGSAMALFYLLLLSLSEHLAFLQAYLIAACIPVLSVSTYVGSATASLKRGVIVGTMLVSLYAVLYSILQLEDYALLMGTGLLVVVLLILMFVTRHQLast
1 -137.000PF06123.12; Q8E9F0_SHEON/61-487; Inner membrane protein CreD  ali  100  1TLLKALTIGILSILALIPLGIIMDLTSDREMLYHSVVEEIGRSWGEQQTLSGPALVIPYRYFVMEEEVSNDGKTRREVKRTYQDELVILPKKLALDLDLKHDFRTRGIYQSLVYSAALKGQADFSLNSYDIPNLIALDNKNARLVFGVSSNQAIDKVEKIEIKGDSALLSGSLMSGTGLTTGGLEKGFNQGIQVSEASDFSVNFAMTLRGSQSISALPLGEQTLINIQADWPHPSFKGLLPAEREINAKGFTASWNISHLTRNYPQEFVKSNQSTLTEVVANAILFEPVTHYGKIDRSVKYGLLFIVLTFIMLFIFELGQKTSLSIVQYILVGSAMALFYLLLLSLSEHLAFLQAYLIAACIPVLSVSTYVGSATASLKRGVIVGTMLVSLYAVLYSILQLEDYALLMGTGLLVVVLLILMFVTRHQ 427
2 -10.600PF14667.6; E6U1Q3_BACCJ/375-523; Polysaccharide biosynthesis C-terminal domain  ali follow..  11  3........................................................................................................................................................................................................................................................................................................KYYAPVAILFSIFAVTSSLLQGINRQRY-AVIALLAGLIFLTFTYLMIVWLGPAGAILATGVGYVIAIGVNVWAIGRLLLIVMFASLMALVVFLVRNLIGAILPLETWINGATILFTSIVAGLLTYG.... 141
3 -9.390PF07457.11; U5L9U3_9BACI/2-108; Protein of unknown function (DUF1516 topsan)  ali follow..  20  9..............................................................................................................................................................................................................................................................................................................VVALVLFFAALGMHNSGKAKGVKVVQMIL------LFYLLIIGLTSGINIDLLYVLKALLGLWVIAMIEMIIIRTTKGKKTSILWVQFVVAAILVIY............................ 105
4 -8.320PF15971.5; D2RW44_HALTV/57-219; DolP-mannose mannosyltransferase  ali follow..  11  14.....................................................................................................................................................................................................................................................................................................................................PVPFAITAALAVLS-------GNMYVLHGLSVILTLLVAAANILLVGWVAFLVTGEDAAAVAAGLTMLVVPELFLLPLAGVWAQFYALFFGVLSLALALRDR 109
5 -8.210PF03208.19; D7LLJ1_ARALL/49-193; PRA1 family protein  ali follow..  13  17...........................................................................................................................................................................................................................................................................................ALSKPESISDAAVRIVNYLTVATAIVGFSLVT---------HPFSLVFLLCLLASWLFLYLFRPTD-TFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMVGVALICAHGAF................................ 134
6 -8.060PF07698.11; Q8EPX7_OCEIH/268-467; 7TM receptor with intracellular HD hydrolase  ali follow..  7  3........................................................................................................................................................................................................................................................................................................PLLGLGLLVAIITLFIAVELYRNAKENDWNMKKVAAVLLISVVTVFLMKVTSLYT-QLFFVTPIATAAILHK-----LLLHERIAIKMAIFYSIIATVIFNGQIAGALNVEVGIYFLVSQVAAVGLLSN.. 129
7 -8.030PF14184.6; R6V4V5_9FIRM/10-136; Regulatory protein YrvL  ali follow..  16  1........................................................................................................................................................................................................................................................................................................EKIITLLLCGVLLIIVLSVLALISGMKVFGFEYRSIG-SIILFFIIATIISYPLGLIAGALPKALLSLDKVSMPTAITLYLILDTFATFWGLRITDYCMQSISAEDISIFVISLIFAFLGV.......... 122
8 -7.900PF00892.20; YDED_BACSU/160-296; EamA-like transporter family  ali follow..  12  11.............................................................................................................................................................................................................................................................................................................GFAAAFYTLYAVGLLNKFDSLVVVGWAMIIGGFALGFIHPPWQLDFQRLTAEAYAYILFVILFGTMIAFWFFIKSLESLSPKETSLLGSLSAVVTTVVWLKAPFGSFQWIGAICIIGITLILA... 136
9 -7.860PF02175.16; Q20962_CAEEL/17-252; Serpentine type 7TM GPCR chemoreceptor Srb  ali follow..  9  2.................................................................................................................................................................................................................................................................................................HPFYMIAQFWSFFVSLLAMPSLIFFMVEKVFKLPFHGLKFLLVSYFIGTFLFASIICFTFGYHFFVPFFVTSNCDLIINATLFKYGHMIALIFMTIPMILPTAFTVVALKMAHSYEHVRTLLGPVLVLVVIAIDS... 140
10 -7.820PF07695.11; Q72MW7_LEPIC/129-333; 7TM diverse intracellular signalling  ali follow..  10  9............................................................................................................................................................................................................................................................................................................FGILIAMAVYNLFLLLTVRDKSYFF---YVFYILCFAIFLMSQYGFAYEY--RRMNPFLAGLLEFSILLFTRDFLDTKNHVLIILCAMASFSSFFVNLTQGALQVAILGLLTAISILASGIKALMS. 147
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.