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Query: PF06197.13; D0L9X9_GORB4/20-220; Protein of unknown function (DUF998 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IAAAGICYSSWVLEFLWPSPLDPFRSFLSELDAQHCPHREVYVAGDVTTSVCALIAGAVALIPRPLVRGRLAVAAVVLLAAFGASTMADALLPIECLAGIDPGCRAEPSGLLPQLHHIHALTSTLAVFSIFGAMIAATLVAWRTPAWPLLRTAGTVVFAIIVLSTAWMLIADNLSGNYRLGLAQRIQVGGMTVWLVLWGVTLast
1 -97.600PF06197.13; D0L9X9_GORB4/20-220; Protein of unknown function (DUF998 topsan)  ali  100  1IAAAGICYSSWVLEFLWPSPLDPFRSFLSELDAQHCPHREVYVAGDVTTSVCALIAGAVALIPRPLVRGRLAVAAVVLLAAFGASTMADALLPIECLAGIDPGCRAEPSGLLPQLHHIHALTSTLAVFSIFGAMIAATLVAWRTPAWPLLRTAGTVVFAIIVLSTAWMLIADNLSGNYRLGLAQRIQVGGMTVWLVLWGVT 201
2 -8.400PF15345.6; M4AQD5_XIPMA/9-221; Transmembrane protein 51  ali follow..  14  13............................................................................VGLVALGVVMIVWSLVPANTGFNNSSSGSGGDDGIDGKRNKASSVAFVLAGSGVAMLLLSLCLGLRNKQR....................................................... 82
3 -7.650PF10277.9; SFK1_SCHPO/21-232; Frag1/DRAM/Sfk1 family  ali follow..  12  14TIGLIVLLGLWSTQDKWHTPSEPDPVYLSDMGAYTKG---FFIPMCVITGVFYFLTFIMIRLARQWGW-GWFAALTGAAAASCLISLS----------------------DDVHHDNVHWKFTAAFVVLAFVSAASNIFEWLSATRYYPQSSLLRVSFIFKFVIIVVGIICAIAFGGL--------GRSARFEWVVCFLWS 199
4 -7.490PF01109.17; CSF2_PIG/18-139; Granulocyte-macrophage colony-stimulating factor  ali follow..  36....................MNETVDVVCEMFDPQEPTCVQTRLNLYKQGL---------------------------TRLKSPLTLLAKHYEQHCPLTEETSCETQSITFKSFKDSLNKFLFTI............................................................................ 117
5 -6.690PF13988.6; D8MQN7_ERWBE/128-293; Protein of unknown function (DUF4225 topsan)  ali follow..  13  28...........................VQFYHEHEKIIGYIIDGIGVVVGGLQMVAGATLIAGSMATGNVIGVVAGSSLVLSGAGSTIESAEKL........................................................................................................... 94
6 -6.420PF15383.6; F6U3A4_MONDO/140-385; Transmembrane protein 237  ali follow..  10  97FLAGYAVWNIIVIYVLAGKQLSDLSNFLQQYKSLAYPAQSLLYLLLAISTISAFDRIDFAKTSVAIRGFLALDPTALASFLYFAALILSDRIHLYTPATVNGS-AGTEEQILHPWIVVNLVVALLVGLSWLFLSY.................................................................. 240
7 -6.400PF07415.11; LMP2_EBVB9/1-497; Gammaherpesvirus latent membrane protein (LMP2) protein  ali follow..  12  162LLLAAVASSYAAAQRKLLTPVTVLTAVVTFFAIEDPPFNSLLAAAGGLQGIYVLVMLVLLILAYRRRWRRLTVCGGIMFLACVLVLIVDAVLQL--SPLLGAVTVVSMTLLLLAFVLWLSSPGGLGTLGAALLTLAAALALLASLILGTLNLTTMFLLMLLWTLVVLLICSSCSSCPLSKILLARLFLYALALLLLASAL. 369
8 -6.160PF09982.9; C6XMW8_HIRBI/40-335; Uncharacterized protein conserved in bacteria (DUF2219 topsan)  ali follow..  14  53FAVGHSVFT-------------PRDISETEFIPDQHPY----------AGYLYLEATSLIET------ENAIDQVSIRLGQVGKSAGGEWL-----------------------QEEFHSLISDDLPLGWENQVGEQFGADLVYDRRYRALANFGNSDYGVDLVPNAGFTLGTLNTNARAGLTARF............... 186
9 -5.940PF03503.13; OMCA_CHLTR/11-64; Chlamydia cysteine-rich outer membrane protein 3  ali follow..  4..............................................................................VSLSSCCRIVDCCFEDPCAPIQCSPCESKKKDVDGGCNSCNGYVPACKPCG........................................................................ 54
10 -5.920PF04607.17; YJBM_BACSU/45-164; Region found in RelA / SpoT proteins  ali follow..  12  1..................GRVKPVASILEKARRKSIPLHEIETMQD-IAGLRIMCQFV----------------------IQIVKEMLFARKDFTVVDQRDYIAEHKESGYRS----YHLVVLYPLQTVSGEKHVLVEIQIRT.......................................................... 100

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.