current user: public
If you have questions about the server, please let us know.

Query: PF06254.11; A8AHR8_CITK8/52-139; Putative bacterial toxin ydaT, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst PDDLSRKRQKLFRWLDSDTGYARENIRQLTPAILAVLPMEFRGRLIGQDCFMTRFAAMEKEISEAKQAVMLNAPKHQLVKEVREGIEHLast
1 -64.800PF06254.11; A8AHR8_CITK8/52-139; Putative bacterial toxin ydaT  ali  100  1PDDLSRKRQKLFRWLDSDTGYARENIRQLTPAILAVLPMEFRGRLIGQDCFMTRFAAMEKEISEAKQAVMLNAPKHQLVKEVREGIEH 88
2 -7.020PF02023.17; R4GD13_ANOCA/162-247; SCAN domain  ali follow..  22  15PREACRHLRKLHQWLKPESHTKEQIVELVIEQFLAVLPSEMKSWVRECSPQTCTQAVILAE........................... 77
3 -5.890PF14521.6; V2YHW7_MONRO/244-376; Lysine-specific metallo-endopeptidase  ali follow..  5  3.LGNTAATPRYTTWFGEYTAARASLVAKHYSNMLLNGSNPEQFHYDCSCTSDSYAFVYPDRFGTIHLCNSFWTAPMTGTDSKAGTIVH 89
4 -5.780PF10319.9; O17354_CAEEL/1-310; Serpentine type 7TM GPCR chemoreceptor Srj  ali follow..  10  235.KKTKRLQDQLMRAL---------IVQSVIPSFVSFAPT-IGFHLGRAVYYTASVLVSTFPFFDPTAIIFFI-------PSFRAKC.. 310
5 -5.730PF14037.6; Q65GU7_BACLD/3-119; YoqO-like protein  ali follow..  15  42..........VYVWDDLKKRSAKTLILQGITLIIFVALLVFVIMKGQTFIASLPFFEGWETPAKWVYILLVLFLGSNLFIYINEKI.. 117
6 -5.580PF10326.9; Q18441_CAEEL/8-309; Serpentine type 7TM GPCR chemoreceptor Str  ali follow..  11  227.VPNKKLQKQFFKAL---------VVQTIVPTFIFVCPAAFVLLCMNYQTGWIYAALSLYPPLDSLVLMILVSEYRKAIK........ 302
7 -5.580PF17574.2; ITAS_BPT7/1-89; Inhibitor of toxin/antitoxin system (Gp4.5)  ali follow..  18  33..........VYRWKDSKSSKNHTQRMTLTDELVNALTKAAVTAIHEAGRVNEAMAILDK............................ 86
8 -5.400PF17290.2; NCAP_LYCVA/356-532; Arenavirus nucleocapsid C-terminal domain  ali follow..  13  55PVDQKQFKQDSKYSHGMDLADLFNAQPGLTSSVIGALPQGMVLSCQGSDDIRKLLDSQNRKDIKLIDVEMTREASREYEDKVWDKYGW 142
9 -5.400PF06062.11; Y3616_PHOLL/1-117; Uncharacterised protein family (UPF0231 topsan)  ali follow..  13  16..RFSMDHEAIGQWLNEEVKGDLAVIDKIASALAEIKGSERQWQLVGHEYTLLM---------DDEEVMVRANQLEFETDSMEEGMS. 91
10 -5.150PF13803.6; H1YCR9_9SPHI/1-235; Domain of unknown function (DUF4184 topsan)  ali follow..  20  74............................VKAAFIANLPRELYHRFAGYAAFNWS-RYAKQNLPVVVLSILIGGTSHLL-----DSFTH 128
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.