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Query: PF06293.14; Q8E8I7_SHEON/32-243; Lipopolysaccharide kinase (Kdo/WaaP) family, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VDFWREKSAVVGSSKGRYTTWFVAFEHSHWVLRHYWRGGMMEKFSKDAYFYTGLENTRAMGELRLLDALYREQFAVPKPIAANIVRDGLFYRADIIIERVDGAEDLVAKLTKGTMTQAQWHALGATIAQFHRRGVYHADLNAKNILWQPQQTDSAQERFYLIDFDRGELKTPNAKWQKANLDRLLRSFNKEQGKQPTLAFTPANWAALLEGYLast
1 -97.000PF06293.14; Q8E8I7_SHEON/32-243; Lipopolysaccharide kinase (Kdo/WaaP) family  ali  100  1VDFWREKSAVVGSSKGRYTTWFVAFEHSHWVLRHYWRGGMMEKFSKDAYFYTGLENTRAMGELRLLDALYREQFAVPKPIAANIVRDGLFYRADIIIERVDGAEDLVAKLTKGTMTQAQWHALGATIAQFHRRGVYHADLNAKNILWQPQQTDSAQERFYLIDFDRGELKTPNAKWQKANLDRLLRSFNKEQGKQPTLAFTPANWAALLEGY 212
2 -43.700PF06176.11; RFAY_SALTY/1-229; Lipopolysaccharide core biosynthesis protein (WaaY)  ali follow..  13  38..........VFRNIEDTKVVLINTDYGKYILKVFSP----KVKNTERFFKSLVKGDYYEKLFHQTDRVRREGFAALNDFYLLAEIKRYVKTYVMIIEYIEG----IELVDMPEISDEVRGKIKQSIYSLHQHGMVSGDPHKGNFILQGN-------EIRIIDLSGKRPSRQRKAKDRIDLERHYGIKNNVRDIGFYLLIYKKKLRNFLRRI 226
3 -28.200PF01163.22; RIOK1_HUMAN/193-381; RIO1 family  ali follow..  13  1.................NVYHASTANGESRAIKIYKTSILVFKDRDKYV-PRKMVKTWAEKEMRNLIRLNTAEIPCPEPIML--------RSHVLVMSFIGKAPLLKNVLSESKARELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGG-------GVYIIDVSQSHDHPHALEFLRKDCANVNDFFMRH..................... 179
4 -25.000PF01636.23; Q986M8_RHILO/37-295; Phosphotransferase enzyme family  ali follow..  14  1........KVREVGDGNNLVFIVEGAGGAAVVKQ------ALPYVRLVGDSWPLPLKRSFFEYHALTRQEARPGSVPAIYHFDEG------QALIIMEYLPPHVILRRALIDGRQLPNIARDIGLFMARTLAETLLHGDLHSGSIMVTDTE-------TRMIDPEFAFYGPMAF-----DIGMLLANFWMSFFSQRGHEQKGK--RDAMRAY 259
5 -23.400PF10707.9; Q7VWB8_BORPE/13-214; PhoP regulatory network protein YrbL  ali follow..  14  10.............AQGGDRYVFQHPHEPALLVKVMDMEARAVYLEARPFKRWYKQFQRESAYRVYLNEITEYQVPLARIVGLAQTSLG----LGLLAEKITDAPTVSDLVKRGEFDTALAQRLDRFFEDLADAHIVIHDISASNIACGRNA--EGREGLYLIDFGVLPLIPTYAWSRRLNRKRIMRKYAELRAR.................. 201
6 -21.600PF13095.6; Q2GMK8_CHAGB/10-214; Kinetochore Sim4 complex subunit FTA2  ali follow..  15  28........NELGNPGQDGRVWEVKIRGKTYALKMFMFCE-HLVWDLSSPGFYADYFDPFNCECRAYGRLKEENQEHLAVRSHGTEKDCNLPVRAIVKDLVKGGHPF---------AAEQISQMWADLKALHELGIMVRDTNVFNYL-----------NGKIIDFSRS............................................. 204
7 -18.900PF14531.6; B9QMZ2_TOXGV/253-542; Kinase-like  ali follow..  10  15.....VRGTLLGQ-EDPYAYVEAT-TGESFEVHVPLSKEMKQEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIQGVSDEGAGWIVNGFFLYPRMQTNLQTLGEVHHARLQLTLQVIRLVAGLHHYGLVHTFFRAVDIVLDQR------GGVFLTGFEHLV............................................ 193
8 -18.300PF07387.11; Q9YWN9_9REOV/1-306; Seadornavirus VP7  ali follow..  13  72..............NGNSTLMVGKTTIGPLILKKIRSLPCCN-------------DALFKNKYRILARMHGI---------LRLKNDRNNFRYGVILEYCYKP----------MINFSNFITAISDLNDLHDQFYLHGDVNPEILMSDPN------GYLKLVDPVCLLENQVN....................................... 194
9 -16.000PF01633.20; CKB3_CAEEL/63-277; Choline/ethanolamine kinase  ali follow..  12  1.........................SATSFVLRIHREG-----------------QSQFDTDIVNFAIFSERGLG-PKLYGF--------FEEGRMEEFLPS----VTLKLNDVLNTEISRKIGAAFPKYHAINFCHNDLTSSNILQLNSTG-----ELVFIDWENASYNWRG------DLAMHLSEAAVIRNTCPPGIVINEEL....... 209
10 -14.500PF12330.8; E7KK48_YEASL/15-391; Haspin like kinase domain  ali follow..  10  118...........VQLSHNFWQTYHSDMQTSLICKKVCLGALSDLTTSNLISLHELKSLRLIQGTGGVANLLQA-YVVPSNQCENDQ------NLILYLFFKYQGTPLSRCNIDYSQALSIFWQCSSILYVAESKQLEHRNLTLDHILIDSKG------NVTLIDMKCCRFL.......................................... 265
11 -14.500PF00069.25; KS6A1_MOUSE/407-664; Protein kinase domain  ali follow..  18  3..........VKETIGVGSYSVCKATNMEYAVKVIDK-----------------SKRDPSEEIEILLRYGQH----PNIITLKDVYDDG-KHVYLVTELMRGGELLDKILRSEREASFVLHTISKTVEYLHSQGVVHRDLKPSNILYVDESGNPE--CLRICDFGFAKQ........................................... 146
12 -13.700PF07914.11; A8XV81_CAEBR/3-408; Protein of unknown function (DUF1679 topsan)  ali follow..  18  119..............................................................YQLLQKFNHPNIPYTKVYSLKSFEDENHLKGYMAIEFVSNIHSLLMF---QPIKADDLIALVRGIATFAALALNHGDLWQSNVIHSLNKDGSLK-LEAIIDWQAVCRASP-----GLDLSRLLLG-------CLSVEDRRNRGSDILECY 329
13 -13.100PF17667.1; A0A066W7J1_9HOMO/141-684; Fungal protein kinase  ali follow..  11  192.IMWRPEGEVLRKVKGKFGLAQYVWHGDAFGKCRCSLGATGQWECTRCVAETVQIDELEVCDELTDEVPPEDEEANKDPELRIVDTSVCHPTSQRRPHRICVFLVISSKLEKAESPRQFMKAVLDAIWGLFNIGILHRDISEGNVLMLSPG-QQLDQDNNFDDTEITDEVLIDSEKKLREVLD............................. 383
14 -12.400PF12260.8; A0A0R4ICI0_DANRE/195-396; Protein-kinase domain of FAM69  ali follow..  11  8............................................................EEYTFLRVLQDLTNHVAKILGS----------HFYAVEYLAAGHPSPSTFSVKEMVPRVALSFLEMVEHFENDRLHLCDIKPENFAIRKD------LTVVAIDVDMAFFEPKMREILEQNCTN............................. 134
15 -11.500PF07714.17; E9PEI4_HUMAN/50-304; Protein tyrosine kinase  ali follow..  13  1IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC------TSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPV-------------WIIMELCTLG-ELRSFLQVRKYSLDLASQLSTALAYLESKRFVHRDIAARNVLVSSNDC------VKLGDFGLSR............................................ 148
16 -11.400PF04655.14; Q9I2N7_PSEAE/13-250; Aminoglycoside/hydroxyurea antibiotic resistance kinase  ali follow..  2...WALQPDGEPFATHSSRLLPVRHRGAAAMLKISSAEE--------------RFGHVLLNWWDGQGAARVLAYDHQALLMERATGGRSLLEMVRRGDDDEATRILCQAIERGGLYVDCANAARYLLETAREQRPLHGDIHHGNVLDFGERG------WQVID................................................. 171
17 -11.200PF03881.14; Q65TQ2_MANSM/1-287; Fructosamine kinase  ali follow..  10  31.................HEAWLINDGIQPVFVKLDEKSY----------------RSMFRAEADQLQLLARTNIPVPQVYGVGCSQN----HSFLLLEALP----------LEPITAETMGEFGVKLAQLHAQSLLHGNLWIENCGLVKGKV-------TTYDPACYWGDRECDLAFTELFEPFPQEFYDNYNRTYPLDKGYQQRKPLYQLY 260
18 -10.500PF02696.14; Y5734_NOSP7/15-482; Uncharacterized ACR, YdiU/UPF0061 topsan family  ali follow..  14  107............GTKGSGRTPYSRGGDGMLTLK------------------------GGVREVLAAEALHHLGVRTSRCLTMIETGLPLWRRSSVMIRMSSSTKKLLDHVIEQYYRHELVKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFI-FDYYGRYCYGNQPSICKLNLQMLQEPLKAILDKDEMEAALERFDEYYQAEY 330
19 -10.500PF09192.10; A0BPQ4_PARTE/471-761; Actin-fragmin kinase, catalytic  ali follow..  20...WSDLRAIALSDSLDKGAIFVETNEGSVVVK---------------------GYPNIAQGYFFSQLAIVLGIPVPRIVRWDSSEFKVLTKELEIQEYLPG-ITLSYMGKARAGKRHRLIKVGFLMG---DIFINNPS-NSEHMIVRTEPR............................................................ 188
20 -10.400PF02958.20; Q8T3P4_DROME/47-335; Ecdysteroid kinase  ali follow..  11  89.........................KRDSIIFEDMSLENYRVA-------LKKLDLEHTHLVLEKLANFHAAGAALPGIFAKNFDRGFFNQHTRGYEPIMKNLLMSRSLELEPDLCQRYQAKIDRLVENVMEY-LAHGDLWTTNIMFQYDDKGHPI-NAIFIDFQFSAWNSPAI-----DLHYFFST-------ALQADIRLKKQPELVQFY 276

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.