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Query: PF06418.14; A1AWV9_RUTMC/19-281; CTP synthase N-terminus, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KYIFITGGVVSSLGKGIVSASLASILESRGLNITMLKLDPYINVDPGTMSPFQHGEVFVTNDGAETDLDLGHYERFIHSKLGKKNNFTAGRVYENVIERERRGEYLGDTVQIIPHITNEIKRLTQVGGQGADVALVEIGGTVGDIESLPFMEAIRQMGFELGRDNVLFIHLTLLPYIKVAGELKTKPTQHSVKELRGIGIQPDILICRSEYQLPDAERAKIALFTNVPQDSVFTSLDVDTIYKVPRALHEQGLDDVVVKKLSLLast
1 -119.000PF06418.14; A1AWV9_RUTMC/19-281; CTP synthase N-terminus  ali  100  1KYIFITGGVVSSLGKGIVSASLASILESRGLNITMLKLDPYINVDPGTMSPFQHGEVFVTNDGAETDLDLGHYERFIHSKLGKKNNFTAGRVYENVIERERRGEYLGDTVQIIPHITNEIKRLTQVGGQGADVALVEIGGTVGDIESLPFMEAIRQMGFELGRDNVLFIHLTLLPYIKVAGELKTKPTQHSVKELRGIGIQPDILICRSEYQLPDAERAKIALFTNVPQDSVFTSLDVDTIYKVPRALHEQGLDDVVVKKLSL 263
2 -8.700PF02224.18; KCY_MYCPN/5-213; Cytidylate kinase  ali follow..  14  1..IAIDG---SSSGKSSVAKTVARQLG-------------FEYFSTGKM--YRAFAYVMQVNRLDVN-LLLKVINQINWRFEHEKVFYNNADISEVILNQEIAQLASN-LATNPEVRKMAVLRQQALAKNTNIVM-DIGTVV-DAQLKYFLDAKPEIRAQRRAQDLGIAYDSDKAFQELVAEIKHRDAVDTSRTADPLVQAPDAIYIDSSNLTFQQVVELM.......................................... 203
3 -8.300PF02374.15; ASNA_HUMAN/37-340; Anion-transporting ATPase  ali follow..  16  2KWIFVGGK--GGVGKTTCSCSLAVQLSKGRESVLIISTDP--NLFAMEIDPSLGVAELP-DEFFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFTGHTLRLLPTIVERGLGRLMQIKNQISPFISQMCNMLGLGDMEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYE-----TERLIQELAKCKIDTHNIIVNQLVFPDPEKPCKMCEARHKIQAKYLDQMEDLHIVKLPLLPHE............. 288
4 -7.790PF09140.11; Q9A6C9_CAUVC/5-268; ATPase MipZ  ali follow..  13  2..VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRR------------------AWLDNKKIELPEPLALNLSDNDVALAERPEEEQ------------VAGFEAAFARAMAECDFILIDTPGGDSAITRMAHGRA.............................................................................................................. 122
5 -7.610PF06564.12; A7MKN7_CROS8/1-234; Cellulose biosynthesis protein BcsQ  ali follow..  10  3..VLALQGVRGGVGTTSLTAALGWALHQLGESVLVIDASPLLRLSFNIDFDHADGWARALLDDKPWQSTAWRYAPGLDVLRQTERENDVTPALGAFAQHLHLLKASGQWRWILLDLPCGFDAVTRSLLQVADRTLCVVQPDANCHARLH----------QQALPSGCDLLANFRLISSQIQNDIWQLWLQTQRNLVPVAVHRDEAMMES...................................................... 206
6 -7.600PF13500.6; B1XHZ8_SYNP2/6-216; AAA domain  ali follow..  15  1QHIVVAS-TEPYSGKSAVLLGLVQSLKQKGISVAYSK-------------PIGTVWHDEQNRFTRIEDDLRFLGEAFGLKETEVRSFLDEATVAQRLTGQDQTDYPQKLKDDLGAI-------------ASDITFIEAPKWEGSLFNLSAGEIAATLGAK----------ILLVIPYHHKLLVDSLLTIYRFLGDRLMGV----VINKIPPEALETAETQIKPFLAQRGIDVYGLVPADRILRSV.................. 210
7 -7.510PF13614.6; R5N830_9FIRM/2-184; AAA domain  ali follow..  15  3..VIALVNQKGGVGKTTTSINLAASLGYLKKKVLLVDLDPQGNSSTGLGIHKSNFENSIYE--DRCELKDVIIKTKFQNLYIIPSYINLAGVNFELMERSRLDPNFVKNAQ--------LKKYLDVAKESFDYIIIDCPPSLELLTLNALMAA.............................................................................................................. 146
8 -7.130PF02424.15; C5BM31_TERTT/32-314; ApbE family  ali follow..  16  136.........LGGIAKGYAVDRVAQLLENAGVRNATISAGGDSQIIIGIKNPRDGGKAILLPLENTAISTSGDYERYFIDQKT-------GERVHHIINPR-----TGKSVEGVVSVTILGPRGSDTDPMSTSVFVLGVEKGLALVNSLANFECI............................................................................................................. 282
9 -6.900PF00142.18; NIFH1_RHOCB/5-277; 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family  ali follow..  16  1RQIAFYG---GGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNTKLQDTVLLAAEAGSVE------------DLEVEDVVKIGYKGIKCT--EAGGPEPGVGCAGRGVITAINFLEENGAYDDVDYVSYDVLGDVV........................................................................................................................ 128
10 -6.860PF01656.23; P72976_SYNY3/5-270; CobQ/CobB/MinD/ParA nucleotide binding domain  ali follow..  11  8..........GGVGKTTLTVNLATCLKYFQKRVLVLDLDSQISATLSLMAPHDFAAILLANAIQPNPYSKLDIFDIICPEICQIEGLELIPGDIELYDEYLVSEKLHQAAIATENPNFEIKEMLAPVLEEYDFVILDCAPGYNLL-TRSGIAASDFYLLPARPEPLSVVGMQLLERRIEKLKESHKASDDPLN-INLIGVVFILSGGGLMSRYYNQVMRRVQ......................................... 237
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;