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Query: PF06530.12; W1J5U0_9GAMM/1-120; Phage antitermination protein Q, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MRDIQQVLVLWGGWTTSDVNLKVGWSPVAAGFSGLLPASGTSRPTCSDEDGLIIDICVARLRARGREEEFDYIKQHYMLGYSKREIARDLRVSESLVRHKMQVAESFIAGCLEMLDIQLDLast
1 -64.300PF06530.12; W1J5U0_9GAMM/1-120; Phage antitermination protein Q  ali  100  1MRDIQQVLVLWGGWTTSDVNLKVGWSPVAAGFSGLLPASGTSRPTCSDEDGLIIDICVARLRARGREEEFDYIKQHYMLGYSKREIARDLRVSESLVRHKMQVAESFIAGCLEMLDIQLD 120
2 -23.400PF06576.11; A0A028A9Z3_ECOLX/1-176; Protein of unknown function (DUF1133 topsan)  ali follow..  21  24...IQGKLRMWGRWSYIGGGKSEKPELEAFFRDMTRGKQKSWLSHCTDTEALIIDRVISEVLGEYPGLINILRQRYEGRGMSKRKMAECLNRTHPEWC--FSTCEKRIAGWLAVAEHML. 167
3 -15.400PF04297.14; YOFM_LACLA/3-103; Putative helix-turn-helix protein, YlxM / p13 like  ali follow..  20  2................................................EKTNRMNTLFEFYATLLTDKQMNYIELYYADDYSLAEIAEEFNISRQAVYDNIKRTEKVLESYEEKLHL... 70
4 -15.400PF07638.11; Q7UFE5_RHOBA/9-192; ECF sigma factor  ali follow..  16  120................................................DLLLDLDDGLERL-FKVDPDSAKLVELRVFAGLSITEAGELMKMSRSTAYRNWEFARTWFAVHWDG...... 184
5 -12.200PF07374.11; A0A141DZZ6_9VIRU/32-131; Protein of unknown function (DUF1492 topsan)  ali follow..  12  43................................................NRKLELGRLINKLK---NPKSRSILRVTYITKMYVDDICDKMEISRTTFYTWRNMAISELN........... 100
6 -11.900PF02001.16; Y1243_METJA/1-100; Protein of unknown function DUF134 topsan  ali follow..  18  38.................................................................SVDELEAIRLVDYLDYTQEEASKLMGISRRVLWSLLTEGRKKIADALNGKAIVIE 93
7 -11.800PF16509.5; D6CK40_XANAP/7-92; TrfB plasmid transcriptional repressor  ali follow..  17  1.............................................LTAKEFETLRPYLSRL----KERNVEAIRQIMVESRQQTDVADELGVTKKAVSQMVGKAWQAHIEHGE....... 64
8 -11.400PF08281.12; Q89KH7_BRADU/124-177; Sigma-70, region 4  ali follow..  20  1..................................................SFDLRRLLKHL----PEKMQCAIEAVKLDGLSVAEAAQRCHISESGVKVNIHRGLKTL............ 54
9 -10.400PF05263.11; Q9CGR2_LACLA/1-125; Protein of unknown function (DUF722 topsan)  ali follow..  12  1MADLDLLLSDY---HEERIGSGGSSSNTAPQERNYLIKEADKELGRLNDQKQTLDELMEVI---QGTIAKDIIIARFKHRMSWHNVAIRVCLEESVARKQYISFKNTLRS.......... 125
10 -7.520PF03333.13; A0A0E1L7V1_ECOLX/3-96; Adhesin biosynthesis transcription regulatory protein  ali follow..  32.......................................................FLLIGISSIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTR.............. 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24