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Query: PF06576.11; A0A028A9Z3_ECOLX/1-176; Protein of unknown function (DUF1133 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIYPEITGKSGEHLRLNTLEAVWIQGKLRMWGRWSYIGGGKSGNMFNRLLVSKKLTKTAVNEVLRSMKKSGLEKPELEAFFRDMTRGKQKSWLSHCTDTEALIIDRVISEVLGEYPGLINILRQRYEGRGMSKRKMAECLNRTHPEWCFSTCEKRIAGWLAVAEHMLYVPMHDSFRLast
1 -95.000PF06576.11; A0A028A9Z3_ECOLX/1-176; Protein of unknown function (DUF1133 topsan)  ali  100  1MIYPEITGKSGEHLRLNTLEAVWIQGKLRMWGRWSYIGGGKSGNMFNRLLVSKKLTKTAVNEVLRSMKKSGLEKPELEAFFRDMTRGKQKSWLSHCTDTEALIIDRVISEVLGEYPGLINILRQRYEGRGMSKRKMAECLNRTHPEWCFSTCEKRIAGWLAVAEHMLYVPMHDSFR 176
2 -23.400PF06530.12; W1J5U0_9GAMM/1-120; Phage antitermination protein Q  ali follow..  21  4.......................IQQVLVLWGGWTTSDVNLK------------------------------VGWSPVAAGFSGLLPASGTSRPTCSDEDGLIIDICVARLRARGREEEFDYIKQHYMLGYSKREIARDLRVSESLVRMQVAESFIAGCLEMLDIQL......... 119
3 -6.120PF02027.17; B9K3Z4_AGRVS/3-200; RolB/RolC glucosidase family  ali follow..  6  38..............DLMERQREWARTVPLT-------------------------ADFYWRVVAGEFFTKPLLDCPAKGHVFREVQLDRALLYIYGPRNFIANYIKTQTLWRPRRQDILACTMPPFR-EEICKREILRLHNSLSFVSYNT--DADVEYYVAILPNQTFTKGPSFL. 170
4 -5.960PF14942.6; J9NYH1_CANLF/66-211; Organelle biogenesis, Muted-like protein  ali follow..  13  3........................................DLGEIHSRLLDHRPVIQGETRYFVKEFEKRGLREMRVLENLKNMIHETNEHTLPKCTEIMQDNLSQVLQRLQAASDSVCRLQQREQERKKILNDHLIASEKQHIIQWEQHSKQAEVDEEHRKAMERLYAEMEKDL. 146
5 -5.790PF02631.16; RECX_LACRD/83-211; RecX family  ali follow..  10  1.................................................LKEIDTPEEFVESILKKLRGQQL--------------------------DDHAYAASYVRTMINTDLKGPGVIRQHLRQKGIGENDIDDALTQFTPEVQAELAKKLAEKLFRRYRNQPERRREQKV. 101
6 -5.770PF06176.11; RFAY_SALTY/1-229; Lipopolysaccharide core biosynthesis protein (WaaY)  ali follow..  13  127..........................................GIELVDMPEISDEVRGKIKQSIYSLHQHGMVSGDP------------HKGNFILQGNEIRIIDLSGKRPSRQRKAKDRIDLERHYGIKNNVRDIGFYLLIYKK--KLRNFLRRIK................... 227
7 -5.760PF03592.16; E3GF51_EUBLK/75-227; Terminase small subunit  ali follow..  12  1...............LTDKQRLFCLCYIRCFNATKAAIKAGYSAETAYSIGFENLKKPEIKAEIERLKQS-LSEDDLFQKYMDIA........................................................................................... 75
8 -5.720PF08069.12; D2VL67_NAEGR/1-60; Ribosomal S13/S15 N-terminal domain  ali follow..  18  4.MHGAGNGKSQSVIPYRRSPPTWLK-----------------------------VTAEEVEDKIVKLARKGYTPSQIGAILRD............................................................................................. 56
9 -5.640PF15107.6; G1TDS1_RABIT/1-111; FAM216B protein family  ali follow..  9  23...PCSASDTSLLKDLTRGQQRYFYSIMRIYDS-------------------WEALKMRYIHSLQHQQLLGYITQKEALSCAAVLRDSTRRA.................................................................................... 95
10 -5.540PF02840.15; I3LU26_PIG/189-331; Prp18 domain  ali follow..  10  1....................TKFLKFLLGVWAK-AREDYVKRSVQGKLNSATQKQTESYLRPLFRKLRKRNLP-ADIKESITDIIKFMLQREYVKAND---AYLQMAIGNAPWPIGVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQGLKRLMTIC................. 137
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.