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Query: PF06679.12; F174A_RAT/10-190; Protein of unknown function (DUF1180 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PCHFLASAFVLLLLPALNQSVVLPSTVPRAVQESKPLEPGPRTLSPLPPGPTAAQPRGQAQSEGAGPRGAESRNGSIPGAASEADGPEGKAGESSLGGSLAVSPNPSDKPMTQRALTVLVVVSAAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPLEQDDEDDDNTLFDANHPRRLast
1 -90.700PF06679.12; F174A_RAT/10-190; Protein of unknown function (DUF1180 topsan)  ali  100  1PCHFLASAFVLLLLPALNQSVVLPSTVPRAVQESKPLEPGPRTLSPLPPGPTAAQPRGQAQSEGAGPRGAESRNGSIPGAASEADGPEGKAGESSLGGSLAVSPNPSDKPMTQRALTVLVVVSAAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPLEQDDEDDDNTLFDANHPRR 181
2 -9.910PF17686.1; CS018_HUMAN/24-203; Family of unknown function (DUF5534 topsan)  ali follow..  8  20........................................................KRSQPPRNITKEPKVFFHKTQLPGIQGAASRSTAASPTNPMKFLRNKAIIRHRPALVKVILIIALICGMAISYMIYRLAQAEERQQLESLY-------KNLRIPLLGDEEDEGESTHLLPENENE 147
3 -9.460PF00558.19; Q596M6_9HIV1/1-81; Vpu protein  ali follow..  19  2............................................................................................................QPLEIASIVGLIVAFIAAIVVWTIVYFQYREIRKQKKIDRLLNRIRERAEDSGNESDGDTEESTLLEMGYDR. 74
4 -9.400PF06809.11; A2AJ21_MOUSE/1-341; Neural proliferation differentiation control-1 protein (NPDC1)  ali follow..  10  113.........................QELALKEKEAGHSRLTAQPLLEAAQKLLEPAATLGFSQWGQRLEPGLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQGRHGNGLTLVLILAFCLASSAALAVAALCWCRLQREIRSAEMYHYQHQRQQELESASSDEENEDGDFTVYECPGL.. 309
5 -8.960PF17591.2; UL41A_HCMVM/1-78; Herpesvirus UL41A  ali follow..  15  23......................................................................................................................MIGVVCFVFVFILIFCSTLKAFYVRQKTYHLLGT------------ESDDEETTVWEKRRMES 74
6 -8.920PF11947.8; K9VCC6_9CYAN/5-154; Photosynthesis affected mutant 68  ali follow..  14  9............................................................EPATNRKKTPKKPPEPQASVALESDSADKQPKANKTGKQAQSIPEVVSQRMISRGIPTILGISTFFVSYLIVSKGLFDLPNTAV-SYGVLSAS------------DEEVSGSTLGWEEFNT 137
7 -8.640PF17061.5; L9L768_TUPCH/3-296; PARM  ali follow..  17  155.......................SSVPVTSNHSSTATNIQPTGAPTAPASPTEEHSSGHTPTSHATVQPESKEKTPQATVLEPETCELMDTTTASPVVIMQEVEHALSSGSI--AAITVTVIAVVLLVFGVAAYLKIRHSS-----YGRL--------------DDHD-NNPLYD...... 292
8 -8.640PF05399.11; G1LFL2_AILME/29-259; Ectropic viral integration site 2A protein (EVI2A)  ali follow..  9  50...........................NQNENINTNPTTSAGDKGGNSINRTETATSSQVTSLAPISELELYIPSVVRNSSPTVQSTENTTKGHREIFKKEVCEENNNKMAMLICFVIIAVLFLICTLLFL-KVSSLRRSKQVGKRQ---RSNGDFLASSGL................... 188
9 -8.560PF05283.11; F6ZX51_ORNAN/2-123; Multi-glycosylated core protein 24 (MGC-24), sialomucin  ali follow..  12  41.............................................................TAENKTEDCSAATTTRPSPTSSSVTTQTTPNATATPVTPSPRKSSFDAASFIGGIVLVLGV--QAVVFFLYKFCK-----SKERNYHTL............................... 122
10 -7.890PF15814.5; W5NC60_LEPOC/62-381; Protein family FAM199X  ali follow..  16  164..EFIIELNCLTDEKLKQVRNYIKDHSSRLRPSSTRDSWKRSSYGSASTSGVSGASSSNASMVSTASSSNGSVGSSCSAANMSRAHSDSSLSASAAERIRDSKKRSKQRKLQQKAL----------------RQLKEQRQARKERLSGLFL-NEEVLSLKVTEEDNEGDVDILM....... 320
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.