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Query: PF06767.11; Q8VTL2_SALCE/1-337; Sif protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPITIGNGYLKSEIFITPPGNTREAWWKVLWEKIKDFFFSTGKAKADSCLHEMLFADSPPSRERLTEIFFELKALACASHKDRFQVYNPRENDATIIFRIMDENEEVELLRITQSTDTFSYKIMGRSYFLIEDYPGILKSHPQMRLVINKRYSEVVDYPLPSTLCLKLAGAPMLSVPLDNIDGYLYSEWRKGNLDEWKAQEKATYLEAKIQSGIKKTIQTLRHANISESTQQSALLKTMTMCGLKPVETPPPHTHIPIEKMVEEVLLADKKFQACLVSDASVSQNMLADIIETIADKVFHALFRIDPQVIQKMAEEQLTTLHVRSDQQRGDGLCCFLLast
1 -134.000PF06767.11; Q8VTL2_SALCE/1-337; Sif protein  ali  100  1MPITIGNGYLKSEIFITPPGNTREAWWKVLWEKIKDFFFSTGKAKADSCLHEMLFADSPPSRERLTEIFFELKALACASHKDRFQVYNPRENDATIIFRIMDENEEVELLRITQSTDTFSYKIMGRSYFLIEDYPGILKSHPQMRLVINKRYSEVVDYPLPSTLCLKLAGAPMLSVPLDNIDGYLYSEWRKGNLDEWKAQEKATYLEAKIQSGIKKTIQTLRHANISESTQQSALLKTMTMCGLKPVETPPPHTHIPIEKMVEEVLLADKKFQACLVSDASVSQNMLADIIETIADKVFHALFRIDPQVIQKMAEEQLTTLHVRSDQQRGDGLCCFL 337
2 -37.700PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D  ali follow..  16  1MPVTLSGNRHNYEINHSRLPDKEEALYMGVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQAEKIHAFTQLKEYANPSQQDRFVMRFD-MNQTQVLFEIDGKSENCIFKVMEEDEEELFLKICIKYGEKISRYPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWTLTEEEKNKLRCLQMGSFNITTQFFKIGYLFDMVHPTLSYLLQAYKPSLSSDMLFSDVLNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNML............................................................. 318
3 -35.300PF03278.13; Q326S7_SHIDS/44-197; IpaB/EvcA family  ali follow..  11  9............................................................................................................................................................................NINKIRDSVIDKIKDSNSGDQLFCWMSQERTSYVSSMINRSIDE-MAIHNGVVLTSDNKKNIFAAIEKK--FPDIKLDEKSAQTSISHTALNEIASSGLRAKILSSDMDLFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEV................... 154
4 -8.020PF08576.10; B3L4Z5_PLAKH/67-165; Eukaryotic protein of unknown function (DUF1764 topsan)  ali follow..  11  1.......................................................................................................................................................................................................................................................RKEQLEAKANIEDIFSNLKGKEKKATKVGNETRPIKKNSEKSGLHGGPVHKKAKRLVAKGPITERARTSDIYSMEELKMGQGGECSCCF. 99
5 -6.950PF02380.15; Q2I7F8_SV40/83-174; T-antigen specific domain  ali follow..  16  1................................................................................................................................................................................................................................................................................................VFASSLHPGVDAIYCKQWPECAKSMSKHENRKLYRKDPLVWVDCYCCFR 63
6 -6.300PF11162.8; Q8XSB3_RALSO/14-128; Protein of unknown function (DUF2946 topsan)  ali follow..  17  21................................................................................................................................................................................................................................................................................................QEVEWLASQTICSAGGMHSEGMTTWSSGNQDD----SGAGHGDMLCCLF 65
7 -6.200PF18536.1; N6XBB5_9RHOO/89-210; Domain of unknown function (DUF5623 topsan)  ali follow..  12  9MPVEV-GALLKAGIGRCANRPGVSSRLDRVRSKLDNWLEHEYSTDEISRFFDVYYHGDRPEPLNLLNNVDQVERTLKRHYPD............................................................................................................................................................................................................................................................... 105
8 -6.170PF11695.8; Q9A5F4_CAUVC/31-168; Domain of unknown function (DUF3291 topsan)  ali follow..  13  64...........................LSVWPSLGAFVYRSGHVEIMRRRREWFEHMDAGHTPTVEEALEKLAHLEAHG-PAAFTFK.......................................................................................................................................................................................................................................................... 136
9 -6.020PF04467.12; D7DUL7_METV3/44-185; Protein of unknown function (DUF483 topsan)  ali follow..  19  4........................................................................................................................................................................................................................................................................................................YIVDKYKPVVRPAIDPFVSSELGIYRRLDDLELGKLLCCFS 51
10 -5.630PF09701.10; A5D0Z0_PELTS/4-114; CRISPR-associated protein (Cas_Cmr5)  ali follow..  15  35LPVLIRTAGLAQALA---VEARGDAGGKKLLEDIAIVLDFKGKEALLESSRGAELPEYMLLTRKVLAALTWYKRFAQS................................................................................................................................................................................................................................................................... 110

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 1 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35