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Query: PF06837.11; VP92_FDVS/1-207; Fijivirus P9-2 protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDTSHKVYNFECPFELAKVEMKAISNTMHKVDDFVSTIDVNFSDSELDDKVDDLEIKIEKVSGPLLNRYLGSVGKVVFLIFSFLFFGSIKLVLKCFYHLFKCVFCNPLTRCFCSIIFTIIFYTLLFVSCYLLWHYFGDVIIQTIKDINNNRSVNFTNETENFNSKVETTTMKIIQLIFSKSDNNGVEHIIKSANVTSGQTANFTLLNLast
1 -150.000PF06837.11; VP92_FDVS/1-207; Fijivirus P9-2 protein  ali  100  1MDTSHKVYNFECPFELAKVEMKAISNTMHKVDDFVSTIDVNFSDSELDDKVDDLEIKIEKVSGPLLNRYLGSVGKVVFLIFSFLFFGSIKLVLKCFYHLFKCVFCNPLTRCFCSIIFTIIFYTLLFVSCYLLWHYFGDVIIQTIKDINNNRSVNFTNETENFNSKVETTTMKIIQLIFSKSDNNGVEHIIKSANVTSGQTANFTLLN 207
2 -8.060PF07290.11; A0A146G7Q5_9BACT/10-217; Protein of unknown function (DUF1449 topsan)  ali follow..  13  1..........NTPFTIALVLMVAIG-ALELVFSIFGPGLSHLIETGLPDLNHELGDMAPHDAHALDDVRIGQVPLLILFVVFLTAFGVIGLALQFTLASLTKFLLPAPVAGIVAFLGAIPCVRTGGGLLAKILPRDETTAVSEDSFVGRIAVITNGTARRGSPAEARLQDQ------HRQSHYIFVEPDVEGEEFPSGSTV...... 195
3 -7.890PF17628.2; INCD_CHLTR/1-141; Inclusion membrane protein D  ali follow..  15  1.................................MTKVYANSIQQERVVDRIALLERCLDPSNSLPTAKRLVAVAVATILAVALLVVAGL---------LFSGVLCSPVSVLAASLFFGVGAFLLLTTEAVTRERLHRSQTLMWNNLCCKTAEVEQKISTASANAKSNDKTRKL.................................. 139
4 -6.860PF12011.8; NPH2_RFVKA/1-168; RNA helicase NPH-II  ali follow..  14  1....................MENHLPNIFYFPNCVTTFPYRYTQKELDDMKPDERERFKYATFPIIKHRWSHAYVVK---------HVFKLNVETSKRLRRATPPTPVSMNTMLREYITQDGTKISFECYSYLTCKKATSLHDLDDNAIRGLVEGGNRLQLFTNSVGSVKDTV.................................. 149
5 -6.550PF17358.2; V5AGU6_ENTCL/36-170; Family of unknown function (DUF5384 topsan)  ali follow..  16  55.DRQFEDQLRDLEIENRRLELQAKSARVQREKDF---VEQELKQRAAQTDVIQSEADARRNLSSGGKALMQSEGKAREKEASSWW.......................................................................................................................... 135
6 -6.540PF04210.13; Q12VV0_METBU/7-70; Tetrahydromethanopterin S-methyltransferase, subunit G  ali follow..  20  13............................................NEVLEKLNLIDEKIEFVNSEIAQRIGKKLGRDIGIMYGAV........................................................................................................................... 52
7 -6.190PF07267.11; Q2NNY4_NPVHC/1-628; Nucleopolyhedrovirus capsid protein P87  ali follow..  12  453...............YDYCNCKNTISGTPSAVTFVQLLRRTYNLSHVEMTVNFYEL-----LYPLTLYDDESNRIVSYIFAATNYF---QNCAKNFGNMRVDFNKYGPFPQIDSLVMFVIKFNFLCIDTLPMLAQPNIKVHTVLVMRDKIVKLAFNELQYDTTLKTDNRLQRLIQLMNAD........................... 624
8 -5.900PF05039.12; C0A1C9_CHICK/49-156; Agouti protein  ali follow..  13  13..................................AKEASVELAGALPRPDLDQMALEVQEGDGNLLQKSSVLEPQALSTALQAAGREERSSPRRCVRLLESCLCCDPCATCYCRFFNAFCYCRKI.................................................................................. 108
9 -5.890PF12888.7; Q8A5H8_BACTN/57-165; Lipid-binding putative hydrolase  ali follow..  13  1........................................................................................................................................GHLQMSTYNTASNSETEMWLDDLGNFWEYKLKVNVNYAARTFSTTGFVDNVTYESKVKITDGKVL...... 65
10 -5.760PF06394.13; A0A2H2I4M0_CAEJA/125-198; Pepsin inhibitor-3-like repeated domain  ali follow..  18  3..........................................................................................................PEKPSFCSAEETTQYY---FDGCMVQ--YVGGQYARDLSSEEQDELKTFDAEQTVYQNALQAQVQNQVRGLFG............................ 74
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.