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Query: PF07070.11; F4FG08_VERMA/3-218; SpoOM protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst FKKMLSALGVGGPSVDTVLANPHTRPGQTLDGQVNLIGGDAPANIEHLAVGLVTRVEIESGDSEYAGVMEFHRHPISGAFQLAPKQQLSIPFQLVVPWETPITDVYGQRLRGMTMGLRTELSIARAVDKGDLDQVSVHPLPVHERILEAFLQLGFRFKAADLERGRIHGVQQTLPFYQEIEFFAAPQYAQTINELELTFVTNPHGVDVVLECDKRGLast
1 -96.200PF07070.11; F4FG08_VERMA/3-218; SpoOM protein  ali  100  1FKKMLSALGVGGPSVDTVLANPHTRPGQTLDGQVNLIGGDAPANIEHLAVGLVTRVEIESGDSEYAGVMEFHRHPISGAFQLAPKQQLSIPFQLVVPWETPITDVYGQRLRGMTMGLRTELSIARAVDKGDLDQVSVHPLPVHERILEAFLQLGFRFKAADLERGRIHGVQQTLPFYQEIEFFAAPQYAQTINELELTFVTNPHGVDVVLECDKRG 216
2 -24.100PF03643.15; VP26A_HUMAN/8-283; Vacuolar protein sorting-associated protein 26  ali follow..  11  4...........ICEIDIVLNDGLFYDGESVSGKVNLAQPGKRLEHQGIRIEFVGQIELFNDKSN-THEFVNLVKELALPGELTQS--RSYDFEFMQVEKPYES--YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVG------------IEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLI....... 205
3 -20.200PF04425.12; Q6FUH4_CANGA/102-545; Bul1 N terminus  ali follow..  12  161..KITKHAPSPNQKPEEESILKEYTSGDLVHGYCTIENSSQPLQFEMFYVTLEAYTSVIDKQKGKRTLKRFLRMGLNNNRILEPGKKYKKFFMFKLPTQLPPSYDMVDDHLSINYTIDARIVGKDQKTKEKEYNLRVIP............................................................................. 386
4 -17.000PF13002.7; C5DVA9_ZYGRC/141-332; Arrestin_N terminal like  ali follow..  12  1...............................................VMLTLVQKVHFHKPFMAQSKTTDIRSWDIQKNAKDLPVGNYSFPFSCLISGSFPAKSAGSNSETQIKYELCAVVTYKDPRRGASPHQKDQ............................................................................... 102
5 -14.300PF02752.22; Q16ID9_AEDAE/216-390; Arrestin (or S-antigen), C-terminal domain  ali follow..  6  3..........NKIHLEASLDKELYHHGESLSVNVHIAN-NSSKTVKKIKVSVRQFADICLFSTAQYKCTVAEVESEQATVRIQTSKATT-RNMVDGKYRIADPSQRENLGIIVQYKVKVKLCITPGGDLVAELPFILMHPK........................................................................... 174
6 -12.700PF08737.10; H6CBD1_EXODN/363-760; Rgp1  ali follow..  16  278.SPNRFEITRNGQRVVIVIDRPLHRLGETVTAVIDFT--DGHVPCASLRSTLETEKVSPSLAVRSAATINRVTRKIYWGCSDNVLFTKRASFTPSIPASA--TPTFTTSGVNLEWSLRFEF............................................................................................... 395
7 -7.990PF06030.12; Q8Y9H6_LISMO/31-150; Bacterial protein of unknown function (DUF916 topsan)  ali follow..  10  1.......FSVKAILPDNQASSVTYNPKQKQTLKVEITNHSKEEITVNCVANVDYSIPNTKPDKTLKYPFADIVKESVSEVTLKPNETKIWTAAIQMPAE..................................................................................................................... 106
8 -7.760PF01345.18; Q9RWI2_DEIRA/209-325; Domain of unknown function DUF11 topsan  ali follow..  12  1..............LQKTFTPAEVRAGGETTVNLTLTNNGGDSREAVLTDLLNTPELRDFVFVSGSARLGGNARDAVIEYSVPAGGSLQLSFTLRAPRVTA................................................................................................................... 110
9 -7.750PF00339.29; ARRS_BOVIN/22-180; Arrestin (or S-antigen), N-terminal domain  ali follow..  10  8.RDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGATTRLQESLIKKLGAN-TYPFLLTFPDYLPCSPQDVGKSCGVDFEIKAFA............................................................................................... 132
10 -7.630PF17789.1; E1BRS7_CHICK/351-459; Macroglobulin domain MG4  ali follow..  10  1..............LSLIATPLFIKPGLPFFIKVQVKDTV-DRFVGNIPLVITAKSFSQQMDET-----ELISEGSESGRRETSINDGTALFVVNVPTDS.................................................................................................................... 80
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;