Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF07147.12; W5PFC1_SHEEP/1-425; Mitochondrial 28S ribosomal protein S30 (PDCD9), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .
# Score Template Links and tools%idFirst MAAARSWRFVLRGPGLSLHTAAEAAVTAPAVTGSDVKAAPVGRSPPIVASLTADSKAARQRRVERWHATVHAANSVDEKLRILTKMQFMKYVVYPQTFALNADRWYQNFTKTVFLSGLPPLPAQPDREPAQVDLAALRAAACDCLLQEHFFLRRKKRAPIYQERYTVASPFLDQLVASLTGLLSVYTLGILINIKIDCNRPVHFYWLRGEEIIPGGHRKGRVDAVRYQINDKPHNQIRISRQLPEFVPLDYSVPVEIPVKNCKPDKLPLFKRQYENAIFIGTRTADPLCYGHTQFHLLPDKLKRERLLKQNCADQIEVIFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTLALTAQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQLVHFLLNRPLast
1 -143.000PF07147.12; W5PFC1_SHEEP/1-425; Mitochondrial 28S ribosomal protein S30 (PDCD9)  ali  100  1MAAARSWRFVLRGPGLSLHTAAEAAVTAPAVTGSDVKAAPVGRSPPIVASLTADSKAARQRRVERWHATVHAANSVDEKLRILTKMQFMKYVVYPQTFALNADRWYQNFTKTVFLSGLPPLPAQPDREPAQVDLAALRAAACDCLLQEHFFLRRKKRAPIYQERYTVASPFLDQLVASLTGLLSVYTLGILINIKIDCNRPVHFYWLRGEEIIPGGHRKGRVDAVRYQINDKPHNQIRISRQLPEFVPLDYSVPVEIPVKNCKPDKLPLFKRQYENAIFIGTRTADPLCYGHTQFHLLPDKLKRERLLKQNCADQIEVIFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTLALTAQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQLVHFLLNRP 425
2 -7.760PF15021.6; E2R8L7_CANLF/1-204; Protein of unknown function (DUF4521 topsan)  ali follow..  6  86......................................................................................................................................................................................................................................................................................................................QTETKAEDDGLRKSLDRFYEMFDHPHPAARNPLSTSVCQCLINELKGQESQKYALRSFQMARVVFSRDGCSQRHSKDAHFYPVGEGSVLLEDEKPTPGLSKDIIHFLLQ...... 199
3 -7.080PF02405.16; K9WIJ8_9CYAN/42-253; Permease MlaE  ali follow..  12  28..............................................................................................................................................................................................................................................................................................................................TIQTARELSRFGAVNFVGGAFSLAFCRELA-PILTASIVA-GQVGSAYAAEIGAMQIS----------------------EQIDALYMLKTDP-VIPRVVACFLMLP 113
4 -6.470PF00101.20; W0DYU9_9GAMM/15-111; Ribulose bisphosphate carboxylase, small chain  ali follow..  10  1....................................................................................................................................................................................................................................................................................................................................................YETFSFLP-PLSQDEIYD----------QIVYITPALEHEAPEKASAHYWGMWKLPFFGMRNPDRMVGYDNYTQCKGHEFVVYRP 97
5 -5.870PF12938.7; B4L7C4_DROMO/671-895; M domain of GW182  ali follow..  12  97.................................................................................................................................................................................................................................................................................................................................SGQHIRMLGQQIQLAIHSGFISSQILTQPLTQTTLNLLNQLLS----SIKHLQAAQQSLSRGGNTNQM----VANLAIAKYKQQIQNLQNQINAQQAVYIKQQN 192
6 -5.700PF01002.19; POLG_YEFV1/1358-1484; Flavivirus non-structural protein NS2B  ali follow..  9  1...........................................................................................................................................................................................................................................................................................................................VNEALAAAGLVGVLAGLAFQEM-------ENFLGPIAVGGLLMAGRVDGLELKKLGEVSWEEEAEISGSSARYDVALSEQGEFKLLSEEKVPWDQVVMTSLALVGAALHP 108
7 -5.540PF08579.11; Q6CRB1_KLULA/206-324; Mitochondrial ribonuclease P subunit (RPM2)  ali follow..  12  12........................................................................................................................................................................................................................................................................................................................ETDLEPCLNKEAFLETQSKLIEDCMKNKYNQVNAIYKSLIRNEIVPPLSLFEQVLTSICRRDLDQNNIDNQ-------MFELLNCYQDIIQNKLK--SAEIYHLVVGSLLSG. 116
8 -5.530PF12011.8; NPH2_RFVKA/1-168; RNA helicase NPH-II  ali follow..  13  1............................................................................................................................................................................................................................................................MENHLPNIFYFPNCVTTFPYRYTQKELDDMKPDERERFKYATFPIIKHRWSHAYVVKDNHVFKLNVETSKRLRRAT----------------PTLSVPVSMNTITQDGTKISFECYSLHDLDDNA-------IRGLVEGGNRLQLFTNSVGSVKDTVNPNPFMK-VPLKSLHP 168
9 -5.350PF06938.11; B0T8C5_CAUSK/47-187; Protein of unknown function (DUF1285 topsan)  ali follow..  16  14.............................................................................................................................................................................................................................................................................................................................SPIGREALVRLFGYHLVTPVEKLKIQVEDA--PFIATRVDQIGDLLRF---ETNVGDVVEAGADNAIRVETDPATGEPRPYLHVRRGLEALIARPVFYELVELATERD 125
10 -5.250PF12894.7; B6QBR5_TALMQ/41-156; Anaphase-promoting complex subunit 4 WD40 domain  ali follow..  11  5.............................................................................................................................................................................................................................................................................................................................................................P-TMDLIALATEDEQLYVFRLNGQEVLSADEVKGEIRGVRWKNDGRLLAVADAENKLRIISSYTGKTVHHF..... 82
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.