current user: public
If you have questions about the server, please let us know.

Query: PF07220.11; D4HSK9_LEPIR/4-673; Protein of unknown function (DUF1420 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670
# Score Template Links and tools%idFirst MKFGLDANVAYPPLSVLYSIFLIFGCDFLGFYILKLFESSLGKVKNTWIRWQAPLIGALLLSVILYPLALSALTPRFLMKSAAIFLSVLGCANICFFVKNGTKNLVSISYYSNIFKSIQYHSFFEKIGNDKKIKKSFSLFKLIGFIKNKFNLINKNDVLNVFIILLMIGYGFLALCPITNADSLDYHIGVAIEILNQGKMPVFSGWFHGRLAGSGEVLNALGLAIGAEQFGSLLQFCGLLSIYGILSFYSFAEKFSESDGVWRKIIIIAFLSSPVLVFLVSSPKPQLLQIGMTSFAITLLLEIFSKIKTDKNKLFAFSLICILIMSATQAKFSFFLSAFLIGLFSIFSLGSIRLFFYGLLISLFFFVLINFPAIFWKIKNYNSTFIDVLIHPLPGNTFPGVNEFEVSLRNYQDSALIFPLSLIFPNQFGVITTVIGLGLFLIIFVKPIVTQKAFLLSVMIILFVILGSLMGQKASRFFLEPFVWMLISLIGLNSFGKWNIRFVKEAVSTGILLQACATLVIISVGIYQLFPGVFSISLREKVMSQYANGYSLMKWVGLTLPKEAVLLSQHRSIALSERKTLSLDWIPFVDFNSAVASPYLKQIKDENVTHILMFGDTSKNTPFSGCIGNTIGKTKSNQVARNPFNRNDFFTVILVEFQSDKLPQCANFILLast
1 -171.000PF07220.11; D4HSK9_LEPIR/4-673; Protein of unknown function (DUF1420 topsan)  ali  100  1MKFGLDANVAYPPLSVLYSIFLIFGCDFLGFYILKLFESSLGKVKNTWIRWQAPLIGALLLSVILYPLALSALTPRFLMKSAAIFLSVLGCANICFFVKNGTKNLVSISYYSNIFKSIQYHSFFEKIGNDKKIKKSFSLFKLIGFIKNKFNLINKNDVLNVFIILLMIGYGFLALCPITNADSLDYHIGVAIEILNQGKMPVFSGWFHGRLAGSGEVLNALGLAIGAEQFGSLLQFCGLLSIYGILSFYSFAEKFSESDGVWRKIIIIAFLSSPVLVFLVSSPKPQLLQIGMTSFAITLLLEIFSKIKTDKNKLFAFSLICILIMSATQAKFSFFLSAFLIGLFSIFSLGSIRLFFYGLLISLFFFVLINFPAIFWKIKNYNSTFIDVLIHPLPGNTFPGVNEFEVSLRNYQDSALIFPLSLIFPNQFGVITTVIGLGLFLIIFVKPIVTQKAFLLSVMIILFVILGSLMGQKASRFFLEPFVWMLISLIGLNSFGKWNIRFVKEAVSTGILLQACATLVIISVGIYQLFPGVFSISLREKVMSQYANGYSLMKWVGLTLPKEAVLLSQHRSIALSERKTLSLDWIPFVDFNSAVASPYLKQIKDENVTHILMFGDTSKNTPFSGCIGNTIGKTKSNQVARNPFNRNDFFTVILVEFQSDKLPQCANFIL 670
2 -10.700PF17061.5; L9L768_TUPCH/3-296; PARM  ali follow..  28  240.....SGSIAAITVTVIAVVLLVFG---VAAY-LKIRHSSYGRLLDSWGNYNNP----------LY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 291
3 -9.360PF17461.2; Y005_CHLTR/16-363; Family of unknown function (DUF5423 topsan)  ali follow..  18  2...GLLSRFRHPKLRYVYDIALI------AISILCIVSIIL------WTQGSG-----LALFAIAPALAIGALGVTLLVSDLA-IADTVAAVSLPFILTGTAAGLMFSAIAVGILANPLFLMGSMTLGFALMSLHRVTY................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 135
4 -8.420PF07271.11; P32_MYCGA/2-289; Cytadhesin P30/P32  ali follow..  29  3LK--LKSKLV---VSFVFSGVIALGTG-VGLYTLVLHENSVGPRKITSEPWFYPVVGALIVVSLLLGLGIG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 84
5 -7.850PF09586.10; Q839W8_ENTFA/19-846; Bacterial membrane protein YfhO  ali follow..  13  5............PFLIMAIIYLSGS-DAFSQFSHASFNNVLHGKQSLFYTWNA--LGLNYLSLISYLFTLVFFFNNQNMPDALYFLTLL---------KIGSAGLSFWFLAKQTFKIPKWSHVTLSV--------------SYALMSFIVAHSELIMWLDAFIYLPLVILGIHRLM--DQRKPTLLFVSYFLLFITNYYFGF---------------------------------MIGLFSFLYYFARTFTDWQRYKSRIVAYFTTSLLIMVLPAVLDLRTNGETLSEITTFKTEATAFL-----------DIIMKNMIGVYDTTKYGSIPFIYIGLLPLIFCLFYFVTKEVPLKNKLLFGSLFVLLIASFYITPLNLFWHG---------------------------------MHAPNMFLFRYSFLFSFLVILLAGYGWEKFEKDDLGVLSGLILILLAIFALAMGTKGATSYTYVT-LTATFLLLYFFGIAFYQLKKAPMQYLVILLLLLVSGEAIINTRAMVTGILDDWNYASRSLYSEPYPDLKNLVDQTKK---ENDTFYRLENLNGVSANDGINYGYSGISMFSSVRNRHSSTYLNALGFR............................................................. 523
6 -7.590PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  19  1MEHDLERG---PPLSLLFWLYIVMS-DWTGGALLVLYSFALMLIIIILIIF-CPL-GALCILLLMITLLLIALWN---LHGQALFLGIVLFIFGC---------LLVLGIWIYLLE------MLWRLGATIWQLLAFFLAFFLDLILLIIALYLQQNWWTLLVDLLWLLLFLAILIWMYYHGQ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 189
7 -7.350PF13231.6; Q2YBZ2_NITMU/191-351; Dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  11  4...................................................................................................................................................................................................................PMVAWLIWLGTSIFGNSEFG--VRVGAFLCGLITMGYLFALTRNL-YDSATGIRAVLLLAILPFFFATGALMTTDAPLVAAWAATLYYLEQALIAQRER-----AWLGVGIAFGLGILSKYTLGLVGIAALVFVIIDPVARRWLRHYPYLAVLLALLLFSPVIIW...................................................................................................................................................................................................................................................................................................... 161
8 -6.520PF01635.18; VME1_FIPV/40-260; Coronavirus M matrix/glycoprotein  ali follow..  14  14.....NWNFSWSVILIVFITVLQYG-----VYGIKML---------MWLLW--PIVLALTIFNAYSEYQVS----RYVMFGFSVAGAVVTFALWMMYFVRSVQLYRRTKSWWSFNPETNAILCVNALGR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 125
9 -6.370PF10164.9; H3AX96_LATCH/28-133; Uncharacterized conserved protein (DUF2367 topsan)  ali follow..  14  40.....SSTYTIIQQPATTSVVVVGGCP----------ACRVGVLEDDF-----TCLG-ILCAIVFFPIGILFCRQRRCPNCGATF......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 106
10 -6.310PF15673.5; H0WQS8_OTOGA/89-366; Circadian-associated transcriptional repressor  ali follow..  18  26LLFALQGYI-TPLTDLLNRL--------MGRF-LSSFQQSVARIQRIVGVLQKPYMGERYLGTLLVEGMLKTWFPHIAAQKSL........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 110
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.