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Query: PF07239.11; C0DX39_EIKCO/30-267; Outer membrane protein OpcA, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PINDGRYTVTAGYAHENAKIDQLKYSGDGVTLQGRADIPLAQQHAIRAELGYRYLDSDAKANGEKVINGAKTNNVDVYAGYLFSPSGFKNGGLRVGGGLGYSHGKMDLHSHQTDLDGDAVDISANNLYLKAQVEYEQQLGSGWSITPWTEAQVSLHRRVEEKYTQIEFASDGRYKQNNYSLGLGVDVNKQLGESTSLTFGPYYRYARDKATSFTHEDENIEVPKTSRHSFGIRGGVRFLast
1 -109.000PF07239.11; C0DX39_EIKCO/30-267; Outer membrane protein OpcA  ali  100  1PINDGRYTVTAGYAHENAKIDQLKYSGDGVTLQGRADIPLAQQHAIRAELGYRYLDSDAKANGEKVINGAKTNNVDVYAGYLFSPSGFKNGGLRVGGGLGYSHGKMDLHSHQTDLDGDAVDISANNLYLKAQVEYEQQLGSGWSITPWTEAQVSLHRRVEEKYTQIEFASDGRYKQNNYSLGLGVDVNKQLGESTSLTFGPYYRYARDKATSFTHEDENIEVPKTSRHSFGIRGGVRF 238
2 -25.700PF01278.20; COLY_YERPE/30-312; Omptin family  ali follow..  1..SPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYDYDWMNENSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRIND-FELNALFKFSDWVRAHDNDE---MRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQSIGGDAAGISNKNYTVTAGLQYRF 283
3 -25.500PF05150.12; A0A0W0SPB7_9GAMM/33-312; Legionella pneumophila major outer membrane protein precursor  ali follow..  10  3PCEAKKWDIGVQALYLQPIYSSQREHDWDWGYRLEGSYHFSTGNDITMTWVHFDDDNSHHSGYAPFGITIDNRFDQVNLVMGQHVDMGLLKDARFYGGLQYARIRLDATYNYAATIPVLRDADFNGVGPVIGIDYAYDLVRGFSITANTAGSI-LYGTSRFNNRFIFAPSGLVPINVYASIEAKLGLKYAYEPQGVFNIEGGYQVLNYFDALHVFNLAANLKNSDFGLY-GPYLGAKW 278
4 -25.300PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein  ali follow..  11  25..AEHQSTLSAGYLQTHTDM---PGSDDLNGINVKYRYEFTDTLGLITSFSYANAEGEQKTHYNDTRWHEDSVRNRFSVMAGPSVRVNEWFSAYALAGVSYARVSSFAGDYVTLTSDEGKKQEHL-------------------------------------------TRSDSGRRSHTALTYSAGVQINPTENIVVDLA--YEASGRGDWRTEA--------------FIVGTGYRF 199
5 -24.900PF17251.2; Q6MB36_PARUW/28-317; Protochlamydia outer membrane protein  ali follow..  9..DDISWNQKAPSYNPNYKLHRKFKDLDIVQIGLKGRTMLGYNFYGRASVNWGFGSEDFVVTDTRRDVIDENFVYDLSIGVGYPFYFSCTLALSPVVGYALDSQHISVEQGGLGFDSTGHKFNSRWYGPFVGVDFNYRPYGE-TWNLYAEVEYHFARFKGRYHDELLSQHHIHRSKHAHAWTFALGADYDFSNDWTAGLCVKFQDWTASRRHINLSGNERTSHKWNSYAINLTFGKQF 290
6 -22.500PF01389.17; OMP53_HAEIF/23-224; OmpA-like transmembrane domain  ali follow..  1PQENTFY-AGVKAGQGSFHDGGYRRNTFTYGVFGGYQILNQDNFGLAAELGYDDFGRAKLREAGKPKAKHTNHGAYLSLKGSY--EVLDGLDVYGKAGVALVRSDYKFYEDANGTRDHKKGRHTARASGLFAVGAEYAVLPELAVRLEYQWLTRVGKYRPQDKPNTAINYNPWIG-------INAGISYRFGQG............................................ 201
7 -22.000PF07437.11; YFAZ_ECOLI/1-180; YfaZ precursor  ali follow..  10  13.............................................LLVSASVNAMSISGQAGKEYTNIGVGFGTETTGLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMTVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFRLFGEYYY-----------------SPDSLSSGIQSYEEANAGARYTIMRPVSIEAG--YRYLNLSGKDGNRD-------NAVADGPYVGVNASF 180
8 -21.000PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)  ali follow..  43.....GMTNYNENHDFDYSDWTRGNYLNRLELRAHYQFTDNDKYAVGLGAALRNYQWFHKDGTSPTTTNNRWLNIQPDWRYNFTSNLSSDKELETESGLKYKFNDF-LDRGWNLGGPTENSFNNQQIRGYVPMNFAFFGEKTTTITPYFRQG----------FINKSWNAGANQANNEIDTRLGLRIDQQLPAGFAVSLEYAYEMRNQQDSAPGQKSF--------SKFHYTGVGLSY 283
9 -21.000PF05736.11; PORF_PSEFL/1-186; OprF membrane domain  ali follow..  12  26..GQGAVEGELFYKKQYNDSVKHIEDGFNPGARIGYFL----TDDLSLNLSYDKTNHTRSNDGTGS-QKIGGDTSSLTAQYHFGQAGVDSLRPYVEGGFGHQSRGNVKADGHSG--------RDQSTLAIAGAGVKYYFTNNVYARAGVEADYALDNGKWDYS-------------------ALVGLGVNFGGN............................................ 185
10 -20.000PF03922.14; Q98A70_RHILO/45-230; OmpW family  ali follow..  11  1..APSPWQIRLRALGVITEDSGYVNASNTVTPELDISYFFTDNIAAELILGTTYANIDGQGAIGGLGKVGKVWLLPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVGSADDL----------------------------------------------------------KVKNTFGAALQVGFDYMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKLDPWVIGAGLTYRF 186
11 -19.900PF16961.5; Q5LG58_BACFN/59-257; Putative OmpA-OmpF-like porin family  ali follow..  13  18...............................................................................GFEGGWFFKDQWKLNLGGGVSFTNNPGDENMGEIPNYRAVADAQSFAYNVSAGVDRYFNIKRVPNLMWYTGIRVGFYGENEMKYDEETSMGKSIAESWNLRGALTIGVDYFVLPALYIGAQIDPFAYTYNKTTYNPQAGLGDLSADSHNAPTFKIGFKF 199
12 -19.500PF16946.5; B8K3G3_9VIBR/48-336; OMPG-porin 1 family  ali follow..  17..SKFHGTLGSNVEVERLIRDDGVNEGKVKYTIAQGSFRHDDLPGWDFGFYSGREELFTGNLKHADYNRGVNSIQEIYVNRSYNHSIDQRTTPGGKVFGSYQLTDRLGMHGYALYHVEYKRGTGEFPYWEVEPGFSYKINDNTGAWLNFRYKLSASLWGEFGSFEKSVDSTGAHAWTEDYSKLGVSANYPLSKSWRMFGEASYKKIDFASGPQRDEF------DGYIPLFILGVNYSF 289
13 -19.200PF13505.6; Q98N05_RHILO/16-224; Outer membrane protein beta-barrel domain  ali follow..  17  26.........................................SGAYIGIGGGFGASVHKFSVAPIIDFNGIGGNGVFGELTAGYDYMVSDRFLLGGFIDANGGNIGPSISIPGADIDL------TNSYGFDVGLRAGYLLNPDTLGYVLGGYSWQ-----HFKLDGSGFAEGLNFTQNRSGYVLGVGMETVLRGNWTLKTE--YRYAAYGDKSVIDFGGGSLNVEPSTHTFHIAANYRF 209
14 -18.100PF11854.8; A1S4W3_SHEAM/64-698; Putative outer membrane beta-barrel porin, MtrB/PioB  ali follow..  424..................................QYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYS-----DGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDMDSIPNLILLGSLSHDYQAHYLGFSFSYQW 635
15 -17.900PF04338.12; Q74AK7_GEOSL/122-330; Protein of unknown function, DUF481 topsan  ali follow..  10  1......LTAGGSIATGNTDTKAATLSTLF--------QVRTKRHRFTVEAKYAYGEADSRTTVRNSLGSLDKVYTYAQTLLEKDSFANLNLRNTEGLGVGYQFFDDRTLNLYAEAGIS--GEDRQDGSGRWAAGLEWEAVPDRLKIFHRQEGYYT------------------PSVSGVTLRADQGVRISLVNDIAANLEVDYRFNSRPEAGK----------RNSDLLFIMGLTYQY 209
16 -17.200PF06178.13; Q8ZQ33_SALTY/16-230; Oligogalacturonate-specific porin protein (KdgM)  ali follow..  1......FSSYLQAATLDYRHE-YADRTRINKDRIAIIEKLPNGIGFYVDASVKSGGVDGEQDKHLSDLVANAIELGV----SYNYKVTDNFVLQPGFIFESGPDTSIYKP---------------------YLRGQYNFDSGVYMAGRYRYDYARKTANYSDDEKTNDSDQIKFDNKKTNYEHNVALAWKLNKS----FTPYVEVGNVAVRNNT---------DERQTRYRVGLQYHF 215
17 -16.700PF07585.11; Q7UY45_RHOBA/256-599; Putative beta barrel porin-7 (BBP7)  ali follow..  10  65.DDNCGNGFELSGMGIFRDEETYQSNRGLLAR-----------FDTGAGAESSMLIAHPDFLAGSVNIQAENELASFEFNRRHSLSSMRGQRVDFLLGYRYGSLEEMLRIDQSSEYTAQFDAENQFHGAQVGLQLQRCSG-ATTWDAHAKIAFGVNRAETTLLAQSTNIGTYDDSSFMVLPEIGLNLTTQVHRDMKLTIG--YSMMIWSDAPTGTNQPAYDLTTSSFIAHGLNIGATF 342
18 -15.800PF13568.6; A6LDL5_PARD8/21-237; Outer membrane protein beta-barrel domain  ali follow..  10  6................................NQGIIWSSLRGLEYTVKAGINIGGTPLPREIRAIDSYRPTLCVSIEGDIKKWFGESKEWGMMI--GLRLENKGMETKATVKNYSTGGVQTKVENSYFSIPVVALYQLNNRVSFSAGPFVSFATNRNFSGYVYDNRASYDFSDNLRKFQWGAQIGTEWKAFKHLIVYADLTWGLNDIFQ............................ 217
19 -15.500PF04575.13; A6VQE8_ACTSZ/196-486; Protein of unknown function (DUF560 topsan)  ali follow..  11  94..AKTAWSVLPFYERQWYATHRYKKA---TGVRGELNHWLNRNWQISTALEYGKEQYHRNALLDGNN---------KLASATLVWLRTPRQYFY--FGGDYSFQRAQ-------------ARHYGYDLKTARIGWGQEWERGISTRLGFAVSK----REYKADHVLGNVFYFSKPREDDIYNINASLWKRDWHLWGITPKLRFNWKK-QRSNFDSL-------SYIDRSITVSVEKTF 291
20 -15.400PF12099.8; R5KMA1_9BACT/7-191; Protein of unknown function (DUF3575 topsan)  ali follow..  13  41...GKKHTVQLFYGLNPWKQSGGDQS-RHWTLMPEYRYWFCQSHLMGGQFNMGSVDLPFGVFNELEDHRYEGWYAGGGITAGYQWPLSKHWNIEASLGVGYDYIQYDKFRCGECGERLKSDHTNYFGPTKLALSVLYIF................................................................................................... 185
21 -15.100PF11557.8; Q7ME68_VIBVY/1-330; Solitary outer membrane autotransporter beta-barrel domain  ali follow..  10  54.VGFHDFDPNEWLNLDNEEADSVNLRKKIGVSTLPFEFALYEKHSLQGRLSALGIEQDVSIVDTSVSDSHREYVLGAFLEYTNSRQLSENWTFDASIGAHLMYYRSDYTYRSDALADYKVNTDAWALVAEPNVQAKYLQMGKWYYWSSAHY--------FYGQGWGEANRGQVGNPEGWYWVNGVKMFYDFEKWGRAVQSVYTSFNRVDVGGDTSESLGT----RHYYEASVGWLM.. 295
22 -14.200PF01617.17; O52104_EHRCH/32-280; Surface antigen  ali follow..  11  2.......................VSGNFYISGKYMPSASHFGVFSAKEEKNPTVALYGLKQDWNGVSASSHADADFNNKGYSFKYENNPFLGFAGAIGYSMGGPRIEFEVSYETFDVKNQGGNYKNDAHRYCALDRKASSLDISLMLNACYDVVSEGIPFSPYICAGVGSMFEAINPKISYQGKLGLSYSINPEASVFVG--GHFHKVAGNEFRDISTLKAFATPSSCHFGVELGGRF 247
23 -14.100PF02462.15; P95343_NEIGO/52-174; Opacity family porin protein  ali follow..  12  1................................................................................................AGYRINDLRFAVDYTRYKNYKAP-STDFKLYSIGASVIYDFDTQSPVKPYFGARLSLN---------ASAHLGGSDSFSKTSAGLGVLAGVSYAVTPNVDLDAG--YRYNYVGKVNTVK--------NVRSGELSAGVRVKF 123
24 -14.000PF05538.11; PORA_CAMJE/1-424; Campylobacter major outer membrane protein  ali follow..  226......................WDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLD---SELDDKTHANGNLFALKGSIEVN---------GWDASLGGLYYGDKSTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTGRNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGG-KLEAVARVDYKYSPKLNFSA--FYSYVNLDQGVNTNE-------SADHSTVRLQALYKF 424
25 -13.800PF06629.12; Q47GV4_DECAR/36-256; MltA-interacting protein MipA  ali follow..  10  35............................IEPLRAGVYFWGSEDRKMGLGLAIEP-RFGYKAGDGARLVGMNTRGKSIEGGPAFDWDLG--------------------FVSLSASLFTDLTNSSRGESARLYAYRQIVKNETWKIGAFVGIDRMSSRVSNYFFLEASPDRPAFHTGSATNATAGFDGRYRLDKDYSVLFGLQQTRLGHEVAH---------SPTRQATVAWLGIAWNL 221
26 -13.400PF03797.19; Q32HY9_SHIDS/423-663; Autotransporter beta-domain  ali follow..  11  14..................TDAGAGFEQTLTGLTLGIDSRFESSTIRGLFFGYSHSDIGFDHGGKGNVDSY---------TLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAFGDYNSNGAGAHVESGFRWVDGL-WSVRPYLAFTGF--TTDGQDYTLSNGMRADVGNTQILRAEAGTAVSYHMDLQNGTTLEPWLKQEYADSNQVKVNDDGKFNNDVAGTRGVYQAGIRS 228
27 -12.600PF10626.9; Q5LEH6_BACFN/26-192; Conjugative transposon protein TraO  ali follow..  10  3..GMRGIQLTGGLSDNMRW---KNGDGFGYHAGIAVSTYTKNAHHWVVGAEYLEKRYGYRDC------LYPASQLTGEGGYYLNFLSDRKKTFFAALGLSALAGYETVNWGESLLPDGSRLTDEDNFIYGLTLELSAYVTDKIVLLVNGRQRVLFGGDC-----------------GKFHTQVGVGIRFMI............................................... 167
28 -12.300PF00267.21; OMPF_ECOLI/28-362; Gram-negative porin  ali follow..  11  145.....GLNFAVQYLGKNERDTARRSNGDGVGGSISYEY------GFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDAN---------NIYLAANYGETRNATPITNKFTNTSGFANKTQ----DVLLVAQYQFDFGLRPSIA--------------YTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD--YIINQIDSDNKLGV--------GSDDTVAVGIVYQF 335
29 -12.200PF03349.16; Q9KT62_VIBCH/16-428; Outer membrane protein transport protein (OMPP1/FadL/TodX)  ali follow..  10  103PVNE-QFAWGVNAYKTEFSDSGGLTDVKSFNLGLAGSYRVNKEWSFGAGLDLIYGQGTMKRRGTSLLNVDKADGWAVGFNLGTVYEMDENNRF----GLSYRYPEFKAKDDYGQEITLPLPDI-----AEFSGFHKI-ENTQFAVHYSVKIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTYYLNSDWTLRAGYMY------DTSAQDSRTSISVPDSDRQWLSAGFTYNI 365
30 -12.100PF05275.11; E0TF15_PARBH/59-266; Copper resistance protein B precursor (CopB)  ali follow..  13  18........................................GDSLYWNGQAWYGGDINKLWFKSEGRASLNGEGVDDAEIQALYSRAVAPFWNVQ--AGVRYDIEPDSLAPYWFEVDASAFLSEKGDVTARIEAEYELLLTQRLILQPRIEANLSAQDIPERETGA--------------TLDAGLRLRYEIRREFAPYVGVEWQSAFGETRDMIKAAGG--EGDDIVFLVGLRTWY.. 208
31 -11.600PF01856.17; O26005_HELPY/59-248; Helicobacter outer membrane protein  ali follow..  15  2............................................................................FEVGYKQFFGKKKWFGMRYYGFFDYAHNRSFGGNTLTERDSYQGQYYVNLFTYGVGLDTLWNFVNGFVVGIQLAGDSWATSISKEIAHYAKHHSNSSYSPANFQFLWKFGVRTHIAKHNSLELGPTITHQLFSLTNEKGYTLQAD---RRVYAFQISYLRDF 190
32 -11.500PF10082.9; Q1QI05_NITHX/173-566; Putative beta-barrel porin 2  ali follow..  154.FNRLQLSLNGTADRTTYQNSRLDRDFNQYGAVARASYELLPGVKPFGEVEADTRVHDTRFDRNGFQRDSNGGYAKVGSSFELTRLLTGE------ASIGYAARSYADPRLNQLTGESTLAGVSGVLTRTYTFEVDHDFRRWLTAIGRFTYG---------------TRDYQGSSRSDEIYSLSGDLVYKLTREFQIKAQ--VRRDILASNISGA--------SSASTVVMLGVRLQ. 393
33 -11.100PF03865.13; Q6FDM4_ACIAD/243-561; Haemolysin secretion/activation protein ShlB/FhaC/HecB  ali follow..  13  78PFDYWLLTSSYSKSNYNQT-QSYEYSGKSELIGLDLSRVIYRDAHRKTTLGFGGWYRESRNYEDVEVEVQRRKTAGWKAMLDHTEYFSNSGNLTYKRGTGW--------GAMRAPEEDFDEAFTRVGILQANASLQVPFAQNLQYTAEWRMQSSNKPLTPQDRFSIGNRYTVRGFDGEQTLLADQGFLVRNEISGSIFGKPHYWYAGIDYGEVGGRTAYQPNPLPGTSLLGSVVGLR. 318
34 -10.900PF16956.5; Q3IIM9_PSEHT/1-267; Putative general bacterial porin  ali follow..  13  61PYDQFEYNVYGSYADDDSSD------------------------VTSVGGEYFINNFVVGASYSNLDTGSHNEFYTLSGGFFFN---------NLLAKVTLVENKNGEDFALFDLAGVTVTADDDFDYRAVAAKYFIDLQQGNFLTFEGKY------------ESIDDKENQWVAETNYYFSKATSVFANYNKQDAYSFGAQH---FINENVGIKVGYGNNADDSGNDAYFANMRFQF 267
35 -10.800PF11059.8; Q6LS16_PHOPR/28-325; Protein of unknown function (DUF2860 topsan)  ali follow..  14  113.......................ETDTKIKGFRFQYKNILGSNFSMETSVGQQEIDSEKSGQKQNLSETEIASL-IIYLEGAYRQPIAPGRLLR--GALNYTRFDAD-------------GDAMSYDTYGAQLSIIQML-PSSSLALTFGYK-------NAQYEAENPVFDEKQKDDLWSVFLAYEYNEPFGWT-DWGLVSLIGYNT-TDSNIN-----FYNEDTLMATVGINY.... 297
36 -10.700PF12094.8; G4QGK9_GLANF/10-436; Protein of unknown function (DUF3570 topsan)  ali follow..  205.............AAFEQTRIDGSDDKSTVDALFGLTQVINRRMIVQLNYSYSNSSGENGETQSIVHENRPDSRAKHSVYAQTKYAFDNAV-----ADVSYRFATDDWDIQSHT----------------IDSRLRYNLTETDYIQPHVRYADFYRPFLNEGEALPSVASADYRLGEMTAITVGLKYGHKMNNGHEWGVR--AEYYQQDPKNAGFESIGVLATQDLYPSVKLQFNYNF 427
37 -10.700PF11389.8; I0XL34_9LEPT/28-301; Leptospira porin protein OmpL1  ali follow..  19....................NTISTDGLDSSNNYKATSTDGGTGVLPRLAVIPENRLLTLQHSSNGLISAKTNGGMTGLTLSFGYEQDFGKAFFWRVNAHYTRKVMGGDTEAKFAGQSFYHMIWDYIQIPINIGIKLSVSEDAAIYIGAGIHYTVLGLVADGTDPSANWENTKFNVSGVAPNWLIGAQARMSDKGHIYMEMETLF-SFQYGIAHPSSLGGIQGLAPSVAYPQRIGYKH 272
38 -10.600PF11383.8; B7VSE9_VIBTL/19-333; Protein of unknown function (DUF3187 topsan)  ali follow..  50RVGTIEFKSSYTQASIWAHTSAYSLDYYQNQSNIAIEWQASPIWKTELDYRVVT-------AKDNGLDSFVMGFHDL-------------------FGIG-EVAEDQFTMDFNHAGVHLSDFEGDDLTNALTFYNELLLHSRGPMSLSVGGSLFYNNVKSGRFARHRNGDDYLVSLEGFSASWALGYEYMFNARHSLLVESLNY-YRFNRFSLEALMTENIRNMDNSTDIGFTIGLRF 313
39 -10.400PF10895.8; O83492_TREPA/57-224; Domain of unknown function (DUF2715 topsan)  ali follow..  11  10.......KVGQVGAHPWGKEPAPRTD-YTPTLGLAVGVIAHNGFAFTTELDAGLAFL----------------MFRAQFLVGWAIRSGKNFAFIPSLGVDIL-----------------STQDDKLVGIPINLDFLIFFTKHVGLDFTFGSGVNVPLTKNLKKGANGNGQDLTWSN--------IWAKYCCTSLVMVKIGPVFR.................................. 167
40 -10.100PF16941.5; F7YR64_VIBA7/1-344; Putative cyclodextrin porin  ali follow..  89......YALKIENREQHEGSYHENEDGLKHLFSLNKGYDLSNGWATGLWGFYSNLEYLYSKEDKSEWGERTETGYSILFRPYKRFG-------NWELGLEMYYQIKDNEDYQSNGNINEISDFT---EKYIEPVVQYSFDDAGTLYVRARL-----GDNETNNASNSGGGNANVDYFKDIRKATLGYEQAVGDSWLVKGE--YEFANEVEEKSKAGWEAKNESELTQHTVYLQALYRF 344
41 -9.790PF02264.15; W0LD15_9GAMM/27-418; LamB porin  ali follow..  180..PGGTLELGFDYGRANTKDDFALAEASKDGVMATAEHTQSMFGGFKFVIQYATDSMTSWNSGHSQGSRVDNDGHMLRVLDHGAVKMGSDWEMMYVAMYQNI----------------NLDNDNGTTWYTVGVRPMYKWTPIMSTLFEAGYDS-----------------VKSQRTDDRNSQYKLTLAQQWQAGDSIWSRPALRVFKWGYGNDGIAVNDGGRGNNDEVTFGAQFEAWW 392
42 -9.560PF05420.11; D4Z751_SPHJU/777-1119; Cellulose synthase operon protein C C-terminus (BCSC_C)  ali follow..  11  92PLGSTNATARIWADRKPVTDSIIAYAGTEDPRSGAFGAVMKSGGGLSLSYDRNGNGVYADGSFYHYDGTAVRDNDSVEINAGGYLRAWQNARSGVSVGFNVNYQNYDNNQNYFTYGHGGYFSPQSFLSVNFPIRYWTN-DGPMSIQASVAPGYQSYDQQGEPVYPTERSSYDSISKTGFGLSASGAISYRVSPNTRLGGELNIN.................................. 328
43 -9.540PF13557.6; A5GAC7_GEOUR/76-321; Putative MetA-pathway of phenol degradation  ali follow..  47PLVDVDVDTSFGPKGSEQGVGDLIISPFILQWTDHKLFGMPYFHRFVFDITLPTGA-----YDRNRPVNIGSNTVSINPYYAFTIMPTDRLEMSARLHYLWNSENDEPFVGLGAGTIQPGQA------FHANYAASYEVVKGVRLG--------INGYALQQLTEDKVDGRSQANSDERVFGIGPGIKW-SGNGLSLYLNSYFETGAENRPE.......................... 238
44 -9.390PF04966.12; Q8P873_XANCP/7-378; Carbohydrate-selective porin, OprB family  ali follow..  121PVSTPKVYVHVGAYEVNPVQAQDGQHGLKWSTDDTTGVVVPYAIGYKNKGGDGSMAAMYE-QDNSDYTDPLRDRNGNPAVLSGLGYENKQGRSGMFARFEQQVTNPDPSGARGAILKSTGGQAIEDHFVQLGLVQKGTFASRPQDNIAFVITQQKYSDEAIENLRLARASAGGTGTPA-DNQIMMELSYGIQVTKRLRIAPNLHYVINPDQFNEPTRSNDLK---NALIAGMRIDWNL 372
45 -9.380PF01308.17; MOMPD_CHLTR/1-393; Chlamydia major outer membrane protein  ali follow..  193......WSVGARAALWECGCATLGASFQYAQSKPKVEELNVLCNAAEFTINKPKGTAGTDAATGTKDASIDYHEWQASLALSYRLNM-----FTPYIGVKWSRASFDADTIRIAQPKSATAIFDTTTLNPTIAGAGDVKTGA-------------EGQLGDTMQIVSLQLNKMKSRKSCGIAVGTTIV--DADKYAVTVETRL----------------------DERAAHVNAQFRF 393
46 -9.270PF14391.6; R7CWT2_9BACE/69-370; Domain of unknown function (DUF4421 topsan)  ali follow..  10  63.....SVDVHDLFGKDSHRSQKSEFNLSLYSAKLGADIYYLKSSNNFKVKNFRFDGLKSEMKGINLYYIFNNRRFSYPAAYSQS-TNQRKSAGSLIAGFSYSRHKFLFDPGQLPEGISGQKIRYIDYSLNFGYGYNWVFAKNCLANLSVTPAVGY---KASDICFENGAYNETDHNINFDVITRAAVVYN-NTKYYVGASLLAHTYDYHRKRFWI--------NNTYGILQFYVGFNF 302

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.