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Query: PF07246.11; Q88304_SFSV/4-294; Phlebovirus nonstructural protein NS-M, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ITILLIVLATLFILVVGNLKLESKMGNSLTSTCFSQTTGPGIIERYWGFEMAKMPGFDLHCRFNEEGDFKYMTHENAMKQIKIVTTAPDTMKFSCGDETKSLGLSITNDGTNNMMGPAIIYCDTNDFIRNITTGEQSPRVDYEKLKKNAEEKDATIQRKTKEMEEVRAVLDSRNQIAHHEIQQKENEIQKLRNDLRDAIKKGQEHESMKLRVEESDARVKGLKEELKQLTYKIFDHQATKDELQHAKSEMQSLRKKIKDFESIPQAKKSSNSSVTLMTTAVLSLLGSSMAALast
1 -112.000PF07246.11; Q88304_SFSV/4-294; Phlebovirus nonstructural protein NS-M  ali  100  1ITILLIVLATLFILVVGNLKLESKMGNSLTSTCFSQTTGPGIIERYWGFEMAKMPGFDLHCRFNEEGDFKYMTHENAMKQIKIVTTAPDTMKFSCGDETKSLGLSITNDGTNNMMGPAIIYCDTNDFIRNITTGEQSPRVDYEKLKKNAEEKDATIQRKTKEMEEVRAVLDSRNQIAHHEIQQKENEIQKLRNDLRDAIKKGQEHESMKLRVEESDARVKGLKEELKQLTYKIFDHQATKDELQHAKSEMQSLRKKIKDFESIPQAKKSSNSSVTLMTTAVLSLLGSSMAA 291
2 -7.970PF15290.6; M3ZY07_XIPMA/184-491; Golgi-localised syntaxin-1-binding clamp  ali follow..  21  68....................................................................................................................................................................................LQQKEVAIRHLKTKLMESEN----------KVHDRENEIQEFKSQLCRMREDWIEEECHRVEAQLSLKEA---RKEIRQLRQVVETMKNS-IDINIQNRKLESLLHSMELA 176
3 -7.630PF12004.8; W5M8I3_LEPOC/710-1219; Domain of unknown function (DUF3498 topsan)  ali follow..  24  376..........................................................................................................................................................................ELRNKEELTQTEKYQQEIAILQDKLRLSAKKLEDYESYQARLEESEERLRRQQEDMKGIISRLM---SVEEELKKDHSEMQAV---VDSKQKIIDAQEKRIASLDAANARLMSALTQ.... 505
4 -7.400PF10018.9; Q2M0F9_DROPS/39-211; Vitamin-D-receptor interacting Mediator subunit 4  ali follow..  18  1.....................................................................................................................................................................................GDLLDLLVAKDEEFRKMLELAEEQAKVEDAMDKLRAKVEVHDREIQKLQ----------KSLKDAELILSTAIFQ-QKLASINQANKRPVSSEELIKYA-ISSANAVSA. 101
5 -7.380PF15961.5; ZN839_HUMAN/7-805; Domain of unknown function (DUF4764 topsan)  ali follow..  16  336......................................................................................................................................................................................AGEQRASPSKARLKEFLQQCDREDLVELALPQ--AQVVTVYE----LLMKVEKDHLAKPFFPAIYKEFEELHKMVKKMDYLSSSGLCSQETLEINNDKVAESLGIT... 439
6 -7.370PF04880.13; G7XHM6_ASPKW/134-306; NUDE protein, C-terminal conserved region  ali follow..  21  1..........................................................................................................................................................................................SLEDMEQKYNMAIERS--EDEVKAGEKERE----ALRIQCQRL----------RDELSEQKLDNEILQEKLRHEQYGGRRKKPTPLSRTSSST............ 80
7 -7.240PF15030.6; F1Q3V1_CANLF/2-272; Protein of unknown function (DUF4527 topsan)  ali follow..  13  2.....................................................................................................................................................QDLEVDTPREDLRLQ-----LRHQGLTLQCQLRDLTSAYREATCLRDQLKSE---LHELRKKQQEANFAVAPLKAKLASLVQKCRERNHLITHL------LQELRRHGLANHLLSETAQSMVDDVAL............... 117
8 -7.020PF15718.5; D3ZNS7_RAT/1-956; Protein moonraker  ali follow..  22  197.............................................................................................................................................................................EEHRNLWEQKGLLEVQRLQKELSSCIHK-DEEHRIRVRRQEQAVRLYVLQQQVKEIQEEL--DKLSPRKIKHTKKSMSRLRAAIRALQVITQFTDRGEHPVPLIRQ--LSLCSAKLDV 344
9 -6.840PF09726.9; H2MT57_ORYLA/2-679; Macoilin family  ali follow..  17  459................................................................................................................................................VQAKQKDKQTVGQLEKKLKGEQEARATAEKQLAEEKKRKKLEEATAARAVALAAASRGECTDTLRRRITELETECKKLTMDIKLKEDQIRELEIKVQELHKYKENEKDTEVLMSALSAMQDKTQHLENSLSAETRIKLDLFSA.... 601
10 -6.660PF04011.12; A0A023BV76_9FLAO/39-197; LemA family  ali follow..  12  8.............................................................................................................................................................AYQRRSDLIGNLVKTVQGAADFERNTLK-EVIEARAKATAVNIDPSNITP---QIAQFQQAQGGLTSALSKLLVTVERYPDLK-----ANQNFLNLQTQLEGTENINVERNRYNEAVGSYTKFMRKFPNNIVLS 134
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.