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Query: PF07350.12; Q5KKX8_CRYNJ/66-484; Protein of unknown function (DUF1479 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KPLPPRFAELKRTIIGEEANQRRLIAGWERLTKRLRDAAEEIERKQQDNIPQTSYDEFINGGNASLIERIKACGAVIIRGVVDEQTALKWLEDVKAYIAKNPSVKGFPENDKQVFELYWSKSQLAARSHPRSMAIQRALLSLFSHNPSAPVSLHTPVTYADRLRIRHPGDAQFALGPHADGGSVERWEDETYRKVYQRCLEGRWEEFDAWTIGERALANQNMYDGPGSCGVFRAFQGWTSMSDTGPNEGTLRVYPLIKELTAYTMMRPLFREKQPRATLSRDEYLSPANWELDFETSRFPNSPLARCQEYNDETHPHLELERTMVSVPRVKPGDQAWWHGDMIHSVESMHQGQGPSAVLYIPAVPLTPQNADYVRDQRSQFMQGRPAPDFPGGVGESSFAGRGTQEDIESHDGRQAMGLLast
1 -142.000PF07350.12; Q5KKX8_CRYNJ/66-484; Protein of unknown function (DUF1479 topsan)  ali  100  1KPLPPRFAELKRTIIGEEANQRRLIAGWERLTKRLRDAAEEIERKQQDNIPQTSYDEFINGGNASLIERIKACGAVIIRGVVDEQTALKWLEDVKAYIAKNPSVKGFPENDKQVFELYWSKSQLAARSHPRSMAIQRALLSLFSHNPSAPVSLHTPVTYADRLRIRHPGDAQFALGPHADGGSVERWEDETYRKVYQRCLEGRWEEFDAWTIGERALANQNMYDGPGSCGVFRAFQGWTSMSDTGPNEGTLRVYPLIKELTAYTMMRPLFREKQPRATLSRDEYLSPANWELDFETSRFPNSPLARCQEYNDETHPHLELERTMVSVPRVKPGDQAWWHGDMIHSVESMHQGQGPSAVLYIPAVPLTPQNADYVRDQRSQFMQGRPAPDFPGGVGESSFAGRGTQEDIESHDGRQAMGL 419
2 -24.500PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH)  ali follow..  9  6..................................................DCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPLKNPENFAAYYGNAIIALVSEAWLG-------------PNYQMTAQVNRVNPGGASQSP------------------------------HRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQT----------------------------------------------LPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRV.............................................................. 238
3 -6.530PF16897.5; W1QBA2_OGAPD/184-290; C-terminal region of MMR_HSR1 domain  ali follow..  12  10VPLTKIDHDEIKAVLQEYRMNSCDVQFRCD--ATVDDLIDVIEAKNRRYIPAIYVLNKIDSFSIEELDLLYRIPNAVPISSGSGWNLDELLEMMWDRLK................................................................................................................................................................................................................................................................................................................................ 106
4 -6.230PF02668.16; PTLD_STRAW/6-290; Taurine catabolism dioxygenase TauD, TfdA family  ali follow..  7  1.......................................DITRIPGSAIGAVVAGADFSGTIDDTQVEEIWQHLVLVFRG-PSNDDLLMFARRFGH-VPKTGLTTGASPDHNEILLISNIL-----DENGQKIGVGNAEWMDWH---------------TDYSFRPRVSRIGFLAAVELPPSGGGQTLFTDMYTAYESLPDDLRQR----------------------------LHSYRARHSLRSGYEDVIEEEYQGEVSIEGPTAKPFVAPEDGTATVHQLIARNPRYANPLNTKRILELDVTSSKEVLQQLFAKPGEPELTYA----LPGDIVMWDQLTVHAKRAFDPTER-RLLRKVV......................................................... 285
5 -5.790PF07014.12; B9HSR1_POPTR/187-445; Hs1pro-1 protein C-terminus  ali follow..  11  110...PDDFLRLKNQLQMRSLDETAPFCFRSRELVEITKSCKELKHKVPEILGVEVDPKGGPRIQEAAMRLYSEKREFEKVYLL--QALQAIEGALKRFFYAYLEAKGNGVLVSSESCDSLTQLFLEPTYFPSLDAAKTFLGESWS................................................................................................................................................................................................................................................................................... 258
6 -5.760PF01501.20; GAUT3_ARATH/334-654; Glycosyl transferase family 8  ali follow..  11  158..LPEVYPKLEKILFLDDD-QKDLAPLWEDMQGKVNGAVETCKESFHRFDKYLNFSNPKISENFDAGACGWAFGMNMFD--LKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPGLITFYNLTYAMDRSWHVLGL............................................................................................................................................................................................................................................................................................ 291
7 -5.600PF06445.15; Q9K6U2_BACHD/7-157; GyrI-like small molecule binding domain  ali follow..  11  1..LPFTIVEQNEKLEGPYTRMNEIGMLWETFNQRVSEIDHLVQDDLSFGI--VEVSSFTKVPEGMATIILPACRYAVFTHKGPQDKFSETVVAALKSLKESGYEKD---SDNYWLEGYDDHRFSPELDNSEC............................................................................................................................................................................................................................................................................................... 144
8 -5.600PF09684.10; G8PUM6_PSEUV/11-155; Phage tail protein (Tail_P2_I)  ali follow..  9  1..LPPNSSAIAVAL-------DLVEDRMSGLPAEVIRDCLDPMRAPASLLDHLGWELSVDVWDREWPEQVKRR---VLSVSAEVHRYKGTPYSIKTALKA............................................................................................................................................................................................................................................................................................................................... 88
9 -5.510PF08943.10; F0M011_VIBFN/16-316; CsiD  ali follow..  7  19............................RSLLEKFNDLTCEWDLQSIEYKPFLRFAYQLGSLLKRIIDDRDQGAFLLEADKDVQAEFEDTETQRRYFVK------------------------------------------------------------------------STAISHLIGLPNFDAMYGKYYARFTVKNVDNSDSYLRQAHRRMELHNDGTYVNERTD------FVLMMKMHESHMEGGDSLLLQDLGKFYNHPMAKQDITWGAPPSKNTGYDIAHPVFFEEDADGKPHMLFIDQFAKPKNVREGLYLYEMGESLEHDPVNVGSMLVIHNRWLHGRDKVPHPELSRELLRQ.......................................................... 297
10 -5.130PF14526.6; U5Q8L4_9BACT/168-316; Integron-associated effector binding protein  ali follow..  9  3....KEMPAFNVIYCRHTGQFNKIGEAYEKLMKWAGLL--TVYHDDPAAIDQVRQSNDVRTEGEIGKMKIDGGRYAVGRFEIDVTGFEKAWNTMCLWLTESGYQP----GEGYPYELYHNSPEDKFVLD.................................................................................................................................................................................................................................................................................................. 135
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.