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Query: PF07464.11; A0A212FM78_DANPL/32-181; Apolipophorin-III precursor (apoLp-III), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst QKHAQEFQKIFNDQLNALTSSKNTEEFNKVLKEGSESVLSQISALSGSLQSALKEANGKAKEALEQAQANLQRTAEDLRKSHPEVEQQANALKAKLQDAVSKTVSETQKLVKEVSANIEQTNQKLTPKIKEAYDDFVKQAEDVQKKLHEALast
1 -46.500PF07464.11; A0A212FM78_DANPL/32-181; Apolipophorin-III precursor (apoLp-III)  ali  100  1QKHAQEFQKIFNDQLNALTSSKNTEEFNKVLKEGSESVLSQISALSGSLQSALKEANGKAKEALEQAQANLQRTAEDLRKSHPEVEQQANALKAKLQDAVSKTVSETQKLVKEVSANIEQTNQKLTPKIKEAYDDFVKQAEDVQKKLHEA 150
2 -11.300PF01442.18; L9KQJ6_TUPCH/68-256; Apolipoprotein A1/A4/E domain  ali follow..  13  1..KLVDNWDTLGSTFQKV-----HEHLGPVAQEFWEKLEKETEELRREINKDLEDVRQKTQPFLDEIQKKWQEDLERYRQ---KVEPLSAQLREGARQKLMELQEQVTPLGEDLRDSVRAYADTLRTQLAPYSEQMRKTLGARLEAIKEG 140
3 -9.990PF11098.8; A1BIR5_CHLPD/1-139; Chlorosome envelope protein C  ali follow..  8  1..........MSESYQKLRKDFKELDFTDRLTFLAESVLMTGQGAVVGGLELAGSVVETVAGTVGSLIDA-----TGIGAMLGRTGGVVGETIDRVAITVKDVSRSAGELYSDAVKNVDNVTDNAARAIGDAGVSASEAVRNIAGSFQKT 135
4 -9.460PF01387.17; F7GY62_CALJA/1-131; Synuclein  ali follow..  13  1...........................MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHVTTVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGNIAAATGFVKKDHLGKSEEGAPQEGILEDMPVDPDNEA 124
5 -9.430PF05823.12; Q9XUB7_CAEEL/32-181; Nematode fatty acid retinoid binding protein (Gp-FAR-1)  ali follow..  11  7.....................................IPAKVTEYLKSITTEEKAAIKEFIKSVMGGNKSVEELSADIKERSPSLYAKVEKLDVLLRTKLAKLDPAALALFGKVIAQGLSFPEMVKKLFKGYIAEYKTLSENAKATITDE 130
6 -8.830PF17258.2; A0A059W5U3_STRA9/1-224; Family of unknown function (DUF5324 topsan)  ali follow..  15  8........................RAATHSAKDGVRHAAEVVAPYAGTAKDAAVHYSQEARTRLAPRVAEAAQQARA-THLSPRIEHARGALPPKVDAAASRAALRTLQAARQAADYTTPRLENAVVNARAAAEPVREEALARGAAALAA 135
7 -8.190PF15984.5; Q8XQX4_RALSO/108-304; Bacterial collagen, middle region  ali follow..  6  49.ASTGNVVTGVGNTVTSAGTLVGG--LGTGQLSPLAPVTTPLAGALTQVGQAVTNAGTTLGTTVEQLTQQLSTAIVPLTSQIIGGTQTVGAT-TGMGTPANSLLGTLGGAIANGGSTLTNANVPVVSNVGGVVGAVGNTVASLGGVAY.. 197
8 -8.130PF06705.11; E2RTU7_GIAIC/25-271; SF-assemblin/beta giardin  ali follow..  3  1............................TETAVKLSNMNQRVSRFHDKMENEIEVRRVDDDTRVKMIKDAIAHLDRLIQTESRKRQASFEDIREEVKKSADNMYLTIKEEIDTMAANFRKSLAEMGDTLNNVETNLQNQIAIHNDAIAA. 121
9 -7.740PF12732.7; F8EDB6_RUNSL/8-87; YtxH-like protein  ali follow..  5  21.....................EKGTEIRDKVRETANGFASDLLDALQRGRQQYTDIKDNVEDKAKELKSKADEKITEVKDR..................................................................... 80
10 -7.400PF07817.13; Q6FNR6_CANGA/250-492; GLE1-like protein  ali follow..  8  1.......................................AKIKSIKEEIVIPVKNADKELRNILSKHKRKINPKFGQLTNTFSQLQSIQNELSHLIDETLNFIAKAIVHQAETEVRAKPESSVPLARLALYIMVRYPEFKELLLARFVKK 121
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.