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Query: PF07600.11; Q8F1Z2_LEPIN/57-225; Protein of unknown function (DUF1564 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEILLFNSNYEVRSSFETNHSETITLLIPQDTWFRFFENDRKILSKKIPEFLKTYGKYLSSQKHISKKAEKTLYQPSQKNQKMKRVNVRVKSKNWILFGILAQAHGVSRCYLFNYLLWLETLGVGDSIVNTVNAGAPTFHRSYRYILDVDLLSHQVTRKLRFKPKNHFHLast
1 -94.400PF07600.11; Q8F1Z2_LEPIN/57-225; Protein of unknown function (DUF1564 topsan)  ali  100  1MEILLFNSNYEVRSSFETNHSETITLLIPQDTWFRFFENDRKILSKKIPEFLKTYGKYLSSQKHISKKAEKTLYQPSQKNQKMKRVNVRVKSKNWILFGILAQAHGVSRCYLFNYLLWLETLGVGDSIVNTVNAGAPTFHRSYRYILDVDLLSHQVTRKLRFKPKNHFH 169
2 -8.210PF11690.8; Q9SKH6_ARATH/500-634; Protein of unknown function (DUF3287 topsan)  ali follow..  11  18LDQVHEEDFSEDPLFLSGDDFEPAGVLFPHTAF-HFPPKDKKEAYDYMDKVVDKHRRLCDERQRLGLKRQTLEARIARVERKVREMESDPFQWELRNFDCVAKIPTMLWMYL......................................................... 128
3 -7.420PF12441.8; A1BIF8_CHLPD/6-84; CopG antitoxin of type II toxin-antitoxin system  ali follow..  18  34..........................................................................IFPDLKPTMKTISLRLPEQMLNRIKVLANERDVPYQSLLKMFLK................................................... 77
4 -7.300PF07328.11; B9K404_AGRVS/5-145; T-DNA border endonuclease VirD1  ali follow..  10  3.................................................................SPSDNIVDRREGSTIEGFKVVSTRLRSAEYESFSRQARRLGLSDSMAIRIAVR------IAGFLEIDAETRHEMEAILHSIGTLSNNIAALLNSYA........ 93
5 -7.290PF10723.9; Q326M6_SHIDS/1-79; Replication regulatory protein RepB  ali follow..  22  23..................................................................TGAEKQRISVSRKKGTHKAINVFIQSELKDDLTQLCKDSGLTQKEMIEHWILKE................................................. 76
6 -7.230PF09274.10; Q9F809_ERWAM/1-76; ParG  ali follow..  21  18..................................................................HRDLDKVVDSPLPSGKSKRVNVNFNEEKHTRFKAACVKNGTSITDVINQLVD................................................... 69
7 -6.980PF13467.6; Q2YPT7_BRUA2/7-71; Ribbon-helix-helix domain  ali follow..  9  12....................................................................................ATSYTLEDPFFKIIEEIAAARNMTVAALVAEI..................................................... 43
8 -6.670PF07478.13; DDL_ENTFA/138-341; D-ala D-ala ligase C-terminus  ali follow..  10  104.....VVKDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRC-------------FFLTSKNELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQ................................................... 204
9 -6.650PF08211.12; W0LDB0_9GAMM/157-278; Cytidine and deoxycytidylate deaminase zinc-binding region  ali follow..  9  4..........................YLPDAFGPKDLDISERLMSPVEHGFQLASDDTLVKAALAAANHSHAPYSKAHSGVALEAEDGTLYAGRYAE----NAAFNPSLPPLQAALILMNISGGNCQKIHRAVLVEAK............................... 111
10 -5.720PF18377.1; G1KHZ7_ANOCA/140-270; FERM F2 acyl-CoA binding protein-like domain  ali follow..  11  51LCHIALKSGLSLEEVAQRTSFKE---CIPRSFCRQIQQNNKFRIRNVFRRFLQRFQRHTMSTGKLTEQDIMHKYLATLENL........................................................................................ 131
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;