Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF07760.11; E4NUD8_HALBP/21-329; Protein of unknown function (DUF1616 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .
# Score Template Links and tools%idFirst VLVLVVLTVAAATIPVIKGTPIRIILGLPYLLFIPGYALVAALFPEAAERSTRMDDNETEIESGIDGIERVALSFGLSIAVVPLIGLLLNFTPWGMRLIPIVAIVSAFTVILTFVASRRRQALNETDRFVVPYERWITDAKAELFAPDSRADAALNVLLVVSILLAAGSTGYAIFVPPPGEQFSELYLLTEDESGDLVADEYPTEFIRGEAKPLHIGIGNHEGREVQYTVVAQLHRVERQNNATVVRERTELHRYTQTVGANSTWSTKTTVSPSMTGDRLRLTYLLYKGSAPENPTIDNAYRENHLWVNLast
1 -115.000PF07760.11; E4NUD8_HALBP/21-329; Protein of unknown function (DUF1616 topsan)  ali  100  1VLVLVVLTVAAATIPVIKGTPIRIILGLPYLLFIPGYALVAALFPEAAERSTRMDDNETEIESGIDGIERVALSFGLSIAVVPLIGLLLNFTPWGMRLIPIVAIVSAFTVILTFVASRRRQALNETDRFVVPYERWITDAKAELFAPDSRADAALNVLLVVSILLAAGSTGYAIFVPPPGEQFSELYLLTEDESGDLVADEYPTEFIRGEAKPLHIGIGNHEGREVQYTVVAQLHRVERQNNATVVRERTELHRYTQTVGANSTWSTKTTVSPSMTGDRLRLTYLLYKGSAPENPTIDNAYRENHLWVN 309
2 -10.400PF06280.12; C5AP_STRP1/597-707; Fn3-like domain  ali follow..  10  6...............................................................................................................................................................................................................VSDKFEVTVTVHNKSDKPQELYYQATVQTDKVDGKLFALAPKALYSWQKITIPANSSKQVTIPIDVSQFSKDLLAPFVRFKQDPTKEELMSIPY........ 110
3 -8.960PF13272.6; Q2NUS1_SODGM/16-116; Putative 2/3 transmembrane domain holin  ali follow..  18  5LLTAVLLLGTIGLVSPQQLPVVVYKLSLITLAAVLGYWLDRSLFPKARPGQYLKHDDRLMADGRFPVQTGLHLVFSAAIVAAVCLAVAMGL.......................................................................................................................................................................................................................... 101
4 -8.660PF03896.16; B0XFI4_CULQU/3-291; Translocon-associated protein (TRAP), alpha subunit  ali follow..  14  4.........................................................................................................................................................IFALLVLPAVLLTVDGGSRLMAHAAEDELDEELDVEVEGEDASVTGQAEETELPAGYPVEFLVGFANKGSDD--FIVETVEASFRYPMDFNYFIQNFSAIAYNREIKPGHEATVSYSFLPSEAGRPFGLNIALNYRDASGNQFSEAVFNETVSIIE 192
5 -7.850PF06030.12; Q8Y9H6_LISMO/31-150; Bacterial protein of unknown function (DUF916 topsan)  ali follow..  13  1......................................................................................................................................................................................FSVKAILPDNQASS--VTYFDLQMNPKQKQTLKVEITNHSKEEITVNCVANTAVTNEMGYKYPFADIVKESVSEVTLKPNETKIWTAAIQMPAEN................................ 107
6 -7.800PF12690.7; C4L5A1_EXISA/43-141; Intracellular proteinase inhibitor  ali follow..  7  6...........................................................................................................................................................................................................AYDASAKTLSATISMTNPNEEAVDFQLVVKKGDQTVFDYGSDYMFTESVI--EEKWEANDKKVFDEVFPLTLEPGEYSVEVIG....................... 94
7 -7.720PF11611.8; A4J6Q2_DESRM/57-186; Domain of unknown function (DUF4352 topsan)  ali follow..  8  13........................................................................................................................................................................................AYVASDIKTATVIGSNPYLQKKTEEQFLLVKIKVTNNDKEARTIKLFDTQGKEYSAMGEADLYVNNDSHFFLEQVNPGMSRSGFIVFEIPKGMQGLTLQC......................... 117
8 -7.640PF05326.11; G1QRT8_NOMLE/4-126; Seminal vesicle autoantigen (SVA)  ali follow..  9  7...............................................................................................................................................................ASPATLLLVLCLQLGANKAQDNTRKIIIK------------DIPKSVRPNEEVTATLAVRTELKECMVVKTYLI---------SSVPLEGGFNYKYTACLCNNNPKTFYWDFYTNRTVQ............................... 106
9 -7.630PF14340.6; D2B7X5_STRRD/4-126; Domain of unknown function (DUF4395 topsan)  ali follow..  19  7.FAAAVTTIVLALVLVTGSAWLLAAQAVVFALSIFGASPYGMIFKGIVKSPPRELEDAAPP--------RFAQGVGLVFALVGLVGYVTQITPLALGATAAALFAAFLNAAFGF................................................................................................................................................................................................... 111
10 -7.260PF18000.1; D8J637_HALJB/680-786; Type 2 DNA topoisomerase 6 subunit B C-terminal domain  ali follow..  13  25.................................................................................................................................................................................................................ENGSVVLAVENHSNTAEDLEIIVSIEPNDLSAGTVIEMDGEWFVKWSPTVPGGETATLEYSVDEEATFD............................... 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;