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Query: PF07919.12; C4JTF4_UNCRE/662-1266; Gryzun, putative trafficking through Golgi, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VVFKEDEEVVPCLSASFAFERSEGNVGEPLLAQLVITSTAHETASAIRLSEVIVAFEGSLRPIKLQASPVAATVSDNQTRISHTMLVDSQSSDAASIQSPTLGGTLSMTGTVDLAFPPGQTKAFNLTCIPREAGKVQVTSITLMIEDEMFNLTSVISSQSFKDPVWWSPGIKGAISRRIGKDRDTITCDILPKPPKVRILTPTLHDHYYTDEHAVLDIQIENEEDEAAEISIEARLLGQSEDSAQIHWVDDPEACVQPRDSSPTSPTDDSGSLGQVKRKEIGALDSGGRKAISLNVTNTSVPLEYGLEISAFYHLLSDPETPIFKTVTLDLPFIRPFEANYELMPRVHPGPWPDFFHVDEPKLIDESEPRAHGLQQRWCLDCKLISFAHETLLIDKVSVAVTGIEGGLVRHIGPEIHTGNVEAAELHPEQVRESQFILELQRLTLGDRQTTTLNLALEVKWRRQDAEAPSSSAVELFIPTTTLSVPRFVIPMGEPRVLATVTRASALPNFIHLDYTLENPSIHFLTFTITMEASDQFAFSGPKSLAVQLVPLSRHTVRYNLLAAGNQKWIQPQLMVVDSYYNKTLRVLPTEGMRADKKGILVYTALast
1 -150.000PF07919.12; C4JTF4_UNCRE/662-1266; Gryzun, putative trafficking through Golgi  ali  100  1VVFKEDEEVVPCLSASFAFERSEGNVGEPLLAQLVITSTAHETASAIRLSEVIVAFEGSLRPIKLQASPVAATVSDNQTRISHTMLVDSQSSDAASIQSPTLGGTLSMTGTVDLAFPPGQTKAFNLTCIPREAGKVQVTSITLMIEDEMFNLTSVISSQSFKDPVWWSPGIKGAISRRIGKDRDTITCDILPKPPKVRILTPTLHDHYYTDEHAVLDIQIENEEDEAAEISIEARLLGQSEDSAQIHWVDDPEACVQPRDSSPTSPTDDSGSLGQVKRKEIGALDSGGRKAISLNVTNTSVPLEYGLEISAFYHLLSDPETPIFKTVTLDLPFIRPFEANYELMPRVHPGPWPDFFHVDEPKLIDESEPRAHGLQQRWCLDCKLISFAHETLLIDKVSVAVTGIEGGLVRHIGPEIHTGNVEAAELHPEQVRESQFILELQRLTLGDRQTTTLNLALEVKWRRQDAEAPSSSAVELFIPTTTLSVPRFVIPMGEPRVLATVTRASALPNFIHLDYTLENPSIHFLTFTITMEASDQFAFSGPKSLAVQLVPLSRHTVRYNLLAAGNQKWIQPQLMVVDSYYNKTLRVLPTEGMRADKKGILVYTA 605
2 -28.500PF08626.11; C0NZX0_AJECG/5-1447; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit  ali follow..  11  818....................EDLLIAEEPATFKVTLQNPFEF---DVEIESLRIDGTGIPFE---------------------------------------------AAATHGLWLAPFTTQEYYISGVAATEGTLEIRGCTVKVKIKRTGLAAKEPFSERPLSWSSNASRSRLGASRKGPEPDIVLIKVIQKQPTVIISLSQSAIMLLEGETRSFDITLQNISTCPLD-FISFSFEDSSTPQLQSALNNKENLPTDMYELELRLSTNPAMTWRRDKLHDYESIAPGETATFTIDIYGKPGLDNAILKIDYANVCTSLADLP-QISLPLTVTVNAGVDVRCDVLPFTSDFAWDNNKLQQSEDSRTSLGDKSSFGFGHCLLLLDLRNAWPNPLTVSFVNENISDGAKSPDDKLKHNPVGIHEIFDELQPGHISRFLFVVSANKLDYEAESSARLLKHLRGSWKDVATGRGGVIDLRAIRLNARM-VDALRIDDADVTFSLRPYTTVKTNTFLTLSATIINRSSKPIHPLLRLDLSKRLAWSGMLQRALPLEPHQTTEVTLGV............................................ 1443
3 -24.100PF12584.8; B8P4P6_POSPM/992-1139; Trafficking protein particle complex subunit 10, TRAPPC10  ali follow..  13  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PVDVPRMHINPWVSPQAKNAALPLFAGQPISAVVSVTTSFPQGCLLRYDIEMTGDWLVSGCKRSDFQAEDGSTFTMPVTLIALHHGELSLPKIAINALPTQGGPRMGSSSVPSCEHGAEKVLV. 147
4 -23.700PF06159.13; J3KCX7_COCIM/67-339; Protein of unknown function (DUF974 topsan)  ali follow..  10  1......................................................................................................................................................................................................LMLPPAFGSAYVGETFSCSLSANNEFLRGDAIRILAEMQTPSQVVPLELYPSSDDNDT-----------------------KSGGIAQVESMQKIVR-FDLKEEGNHVLAVGVSYTEQASGGRVRTFRKLYQFVAQPCLNVRTKATELPPQEV-----------DNRSLGPYGKTKLYRFALEAQLENVGDGIITLGAVTLNPKPPFKSRSLNWDFESSADKESIPTLSPRDVLQIAFIVEQEHGQDMNREGRATLGQLSLEWRSALGDRGFLTTGN.................................................................................................................................. 270
5 -16.200PF12735.7; G3YG86_ASPNA/273-572; TRAPP trafficking subunit Trs65  ali follow..  12  4...................................................................................................................................................................................................................................................................................................................................................................................................LNCDVTFDKAELSMSDGTIETL-----TDAPGLLPPIRCQPRDDITLVYKLTPDYAPDPNPSTTVMVSVLDIQWR-MTPNQSNAAAGTATPNRSSLRERAYSTAGLGVSVSFSGPPHVEVGKPFAWSIFIVNRSSGSRKFSIVAIPRRK-LVSLSTDVRAPLLPGTCFSTELKLLPLAVGALRLEAVRLVDVNTNETIDIKDLPDIHS.......... 300
6 -15.100PF05326.11; G1QRT8_NOMLE/4-126; Seminal vesicle autoantigen (SVA)  ali follow..  3  32.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IIIKDFDIPKSVRPNEEVTATLAVRTELKECMVVKTYLISSVPLEGGFNYKYTACLCNNNPKTFYWDFYTNRTVQIAA.................................. 109
7 -12.200PF00927.22; EPB42_HUMAN/588-686; Transglutaminase family, C-terminal ig like domain  ali follow..  7  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PHLAIKMPEKAEQYQPLTASVSLQNSLDAPMEDCVISILGRGLIHRERSYRFRSVWPENTMCAKFQFTPTHVGLQRL---MFQNLTNYKSVTVVA................ 99
8 -11.900PF12742.7; A2FUL4_TRIVA/291-348; Gryzun, putative Golgi trafficking  ali follow..  11  7............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LLIEVRENSNENFIVCGMTKSNFHMDAGEIRKLIFNFTPLKIGLHKLPEIRV............................. 58
9 -11.200PF15806.5; W5N5Z5_LEPOC/152-598; Domain of unknown function (DUF4707 topsan)  ali follow..  11  17.....................................................................................................................................................................................................................................................................................TVSLDKLPVSTKVKVIVTVWKQEVEKATILQHRSPAHIFRDDLNTFKAQVSTTLTVLPPPSVKCQQMT---------------------------VSGKHLTMLKVLNASSQEEVCIRDVRILPNFNASYLPMMPDGSVSLSCRLPSMLSALEEHNFLFQLQVNEQLQEDTKEGLEVPLVVLQWSTPKLPFTNS-------IYTHYRLPSIRLDRPRFVMTASCESPVRVRERFRVRYTLLNNLQDFLAVRLRGQAAVSSVVCHTPLSNLGYCRGSTLSFTVAFQILRAGLFELSQHMKLKLQFTASVSNPPPDARPLSRKN...... 362
10 -10.000PF13584.6; R5YZT9_9BACE/4-502; Oxygen tolerance  ali follow..  11  11............FLASA---PKQVIQGQQFQVVYTLQNAGGDGFRAPDFSGFSV--------------------------------------------YGPATSQSTSISWVNGKTSKISEYTYTYTLRADKEGSYTFAAATIMVDGKQLSLRVQVLPPDKNAPAPSANGGMSGRQSVQSAVED----------PELFVRLILSKKSVYEQEPILATIKVYLRGGNLLGI--------------------------------------HDLVMPGFDGFITQEIDLGNTQVELENFKGNN-----------------------YQVATLKQVLLYP--------------------------------------------------QRTGNLEITSGKFDFSVLVERPMPGIFRMMSGTQELIRSATTPAV---TVKVKPLPMPRPASYMNAVASNLKLSSSLS-------------------------------------KETLKTNEAVTLKLTLSGTANLKYMKNPDVKFPVDFVYDPKISTDLKN--SGTRTVEYTIIPRRAGEFTIPSVEFFDFSTNR-YKTLATPEYHLT......... 395
11 -9.880PF14874.6; Q4DUQ4_TRYCC/1589-1690; Flagellar-associated PapD-like  ali follow..  12  1....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VPTLSVMPSVLSF-----GRVIRGNRYALPVVFTNTSTVPCRYRVTLPTECKDILR-VHYPRHFLAPGLTVMAQVEISGTQPLGAMSFSLNVTHEGGLIPVKVEIE............... 100
12 -9.670PF05753.14; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)  ali follow..  11  16..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TRARLLVSKQINKYLVEKSDLLVRYTIFNVGSGAVRLVDSGFHPEAFDVGGQPTAVVRIAPQTNFTHVLVVRPKAFGYFNFTAAEV............................. 107
13 -9.310PF15780.5; G3VKZ4_SARHA/34-131; Abnormal spindle-like microcephaly-assoc`d, ASPM-SPD-2-Hydin  ali follow..  12  18.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DVRVGVSRTLPLVLDNPNEEGVEVSVARLPAADKGFS-ISPQSCALQSKERISLSITWTPAKEGRVR--MITFLV........................... 90
14 -9.100PF08522.10; R6SWF9_9BACE/33-153; Domain of unknown function (DUF1735 topsan)  ali follow..  14  29..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KTFTVKLSYPSGDDVKVNLKVDPSLVGAYNVKNDTHYEMLPAEHYQLSQESVTIPAGKITSDEVGIKDATYLCPLSISGAEGV............ 120
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;