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Query: PF07957.11; Q6FUX1_CANGA/1-212; Protein of unknown function (DUF3294 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSELEVLKKKVSDLQELVQKQNLLISKTGKNVLELQIAKQKSDVDNFGPSRAQVTAQFDSTDFATNDDLVQLVAELQGELNVIEERSIRRLVNSTKTDQDATLAPIPNADGEAPSLTDEMFPHTLKEFEEMDDIRLYRLAKFYEKLPLTMKEQEDFDKVLEGKVEDLHISKLSDEDITKELKKLSKDELDDAFNDIARYLGLRSRRGTGIWLast
1 -81.900PF07957.11; Q6FUX1_CANGA/1-212; Protein of unknown function (DUF3294 topsan)  ali  100  1MSSELEVLKKKVSDLQELVQKQNLLISKTGKNVLELQIAKQKSDVDNFGPSRAQVTAQFDSTDFATNDDLVQLVAELQGELNVIEERSIRRLVNSTKTDQDATLAPIPNADGEAPSLTDEMFPHTLKEFEEMDDIRLYRLAKFYEKLPLTMKEQEDFDKVLEGKVEDLHISKLSDEDITKELKKLSKDELDDAFNDIARYLGLRSRRGTGIW 212
2 -10.400PF04513.12; Q287M3_NPVAS/192-327; Baculovirus polyhedron envelope protein, PEP, C terminus  ali follow..  9  18LSNVLNAIRLQSVTTAAQVGQILETVQG-----LGEFDGDFTKLLAEIDARLAAQSSALQAALNQLAEQVRNDLSGITAILNNLTSSVTN--INATLNNLLQAVNGL......................................................................................................... 117
3 -9.840PF08593.10; YQO1_SCHPO/230-286; Domain of unknown function  ali follow..  24  3........................................................................................TRKLENTTRSDQGYLASPVPFLNGNEPANS--GLPERVEDIDELSKEQCVQYLK...................................................................... 56
4 -8.750PF07889.12; B6TRT4_MAIZE/96-218; Protein of unknown function (DUF1664 topsan)  ali follow..  12  38MANAVSSMTKHLEQVQSSLAAAKRHLTQR--EKLDDKLDQQKALSGQIRDDVTDARLKLENIGSEI-KNIKELVWGLDGKIDSMEAKQ............................................................................................................................ 123
5 -8.720PF06334.11; A47_VACCW/1-244; Orthopoxvirus A47 protein  ali follow..  14  51REHIKVDHPDKFLELKRGIYKIIQKSSSIDVDKRTKLMSNIKTMMIN-----------------------PFMIEGLMTSLENLDP------DNKMSYSSVMILGEFDIINISDNEAAFEFINSLLKSLLLLNTRQLKLLEYSIS------------NDLLYAHINALEYIIKNTFNVPERQLILRGQYLTPIFSDLLKYAGLTIKSNILMW 221
6 -8.120PF03915.13; G4UU16_NEUT9/619-1087; Actin interacting protein 3  ali follow..  9  240LNADSDWLVNKVDDLQDLIEDLRKDVVHRGVRPRPNQLESVTKDITTLTKELKKMEEFMKKEKPIWTKIWEKELEEVGRDELRLMEDLMIDLRDEKASETFALVEQATKEQMKEGGQGNT---SNGPTPFGAFSRGLKSISEKVTHADPSEAKEGVLGEVRALQPNHQSRLEAIERAEKLRQKELQTRMVNPLTKELASFVE-KLKKSGGV. 457
7 -7.580PF10186.9; B2WCB9_PYRTR/3-373; Vacuolar sorting 38 and autophagy-related subunit 14  ali follow..  11  79.NLNWQRTKAETAEIQERLGNISDHAHQ-----LRQQMEATRKLLEAKRAANAQRKSDLSSATYGIESRRANELDKVQQKVKRLDYN----------------------------------ADKMHHDTIDLRMQLCTTAAKLAGLKMQRRKTRDGGVKEVFNIGPGSRLDLRDMNDVAPDSLSASLAAVAQLLVRVAAYLGIRL....... 246
8 -7.530PF00804.25; A9RDB4_PHYPA/47-252; Syntaxin  ali follow..  10  11VQAEVNKMNQQLVSLQNVNEKSKGVYRADELKALRAQMDAEIASATKRARFIKVKLEELDRSNIEHRQVRGCEAGTASDRQRISLTENQRKKVKELMDA----------------------FQSLRSKMVDGYKETIERRYYTITGEQADEETIENLQAIREQGRGPVLEAVREIQERLDGVKEIEKHELHAIFMDISVLVG.......... 206
9 -7.410PF06009.12; LAMA_DROME/2566-2700; Laminin Domain II  ali follow..  14  15VLEILEPVSVQTPKELEKAHGINRDLDLTNKDVANKQLDDVEGSVSKLNELAEDIEEQQHRVG-SQSRQLGQEIENLKAQVE--AARQLANSIKVGVNFKPSTILELKT-------------PEKTKLLATRTN.............................................................................. 134
10 -7.290PF07439.11; Q92W45_RHIME/10-122; Protein of unknown function (DUF1515 topsan)  ali follow..  14  6VHQQLGTLLAEVKNLREAFRRSEDK-SDAIRASMHRRMDELVERVGTLEGSTVAMQGDITEMKPITDD................................................................................................................................................ 72
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;