Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public

If you have questions about the server, please let us know.

Query: PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMGLast
1 -53.400PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain  ali  100  1KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMG 92
2 -8.230PF13339.6; M1VYJ8_CLAP2/267-384; Apoptosis antagonizing transcription factor  ali follow..  27KALVAANSFPTVDPGSDGDSEPYEAAEEAA-MKLLNTISSLRENFATQTAVGTKRKRDLEISMSNADIWKQLQEEDAAATPFREDTMEKWS. 116
3 -6.050PF03955.14; CAP9_ADE02/7-116; Adenovirus hexon-associated protein (IX)  ali follow..  12  61AAAATARGIVTDFAFLSPLASSAASRSSARDDKLTALLAQL................................................... 101
4 -5.980PF11221.8; A5E6W9_LODEL/1-184; Subunit 21 of Mediator complex  ali follow..  17  93SQAATQVSLEDNENEFNTAIEELSTDIVLKSRQISILIDSLPGIGVSSEDQLKQIGELYNELKEVEQKRLLKIKEKDELIKNVDDLIVELAS 184
5 -5.580PF08184.11; CU7A_LIMPO/1-59; Cuticle protein 7 isoform family  ali follow..  12  1QAVRYANGYTYDIETGQVSSPYTGRVYETKGKA........................................................... 33
6 -5.440PF16632.5; I3J5L6_ORENI/1242-1306; C-terminal region of Caskin  ali follow..  12  1.......................QHRLEETSASLAAALEAVEHQIKEEDTQNDPTSSSLSGKKATVSILDDIGSMFDDLADQLDAMLD.... 65
7 -5.370PF00362.18; F4W856_ACREC/136-384; Integrin beta chain VWA domain  ali follow..  21  1.....AEDYPVDLYYLMDLSASMEPYRDKLSKLGLQLAKAMQK................................................. 38
8 -5.230PF05859.12; G8Y1N2_PICSO/11-163; Mis12 protein  ali follow..  10  2.LTEHFGFPPLALDVINAVNHIMYKCTQAMENYLNERKQKQQEESERKGGSHRADLDRGLEGASSDEIAVGTGKLETLLESQVDKNFDKFE. 93
9 -5.210PF09426.10; G8BMX6_TETPH/6-177; Vacuolar R-SNARE Nyv1 N terminal  ali follow..  77KVTKVSMHILDGYDCYYTTSDTLNGSITKDTKLFVCINKITVPKILPIRLLSELKQLAESNDEGGEPLSF---DTDEELSLKVGGIIDQF.. 163
10 -5.120PF15011.6; W5KSN3_ASTMX/12-172; Casein Kinase 2 substrate  ali follow..  10  17........................RSALVECSPLISSLGNLAEQLRALKSVDLASTPLCHFPDLQPRLQHKLAQAVDTVLGKLSEKIETLQ. 83

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.