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current user: public |
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Query: PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 | |||||||
# | Score | Template | Links and tools | %id | First | KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMG | Last |
1 | -53.400 | PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain | ali | 100 | 1 | KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMG | 92 |
2 | -8.230 | PF13339.6; M1VYJ8_CLAP2/267-384; Apoptosis antagonizing transcription factor | ali follow.. | 8 | 27 | KALVAANSFPTVDPGSDGDSEPYEAAEEAA-MKLLNTISSLRENFATQTAVGTKRKRDLEISMSNADIWKQLQEEDAAATPFREDTMEKWS. | 116 |
3 | -6.050 | PF03955.14; CAP9_ADE02/7-116; Adenovirus hexon-associated protein (IX) | ali follow.. | 12 | 61 | AAAATARGIVTDFAFLSPLASSAASRSSARDDKLTALLAQL................................................... | 101 |
4 | -5.980 | PF11221.8; A5E6W9_LODEL/1-184; Subunit 21 of Mediator complex | ali follow.. | 17 | 93 | SQAATQVSLEDNENEFNTAIEELSTDIVLKSRQISILIDSLPGIGVSSEDQLKQIGELYNELKEVEQKRLLKIKEKDELIKNVDDLIVELAS | 184 |
5 | -5.580 | PF08184.11; CU7A_LIMPO/1-59; Cuticle protein 7 isoform family | ali follow.. | 12 | 1 | QAVRYANGYTYDIETGQVSSPYTGRVYETKGKA........................................................... | 33 |
6 | -5.440 | PF16632.5; I3J5L6_ORENI/1242-1306; C-terminal region of Caskin | ali follow.. | 12 | 1 | .......................QHRLEETSASLAAALEAVEHQIKEEDTQNDPTSSSLSGKKATVSILDDIGSMFDDLADQLDAMLD.... | 65 |
7 | -5.370 | PF00362.18; F4W856_ACREC/136-384; Integrin beta chain VWA domain | ali follow.. | 21 | 1 | .....AEDYPVDLYYLMDLSASMEPYRDKLSKLGLQLAKAMQK................................................. | 38 |
8 | -5.230 | PF05859.12; G8Y1N2_PICSO/11-163; Mis12 protein | ali follow.. | 10 | 2 | .LTEHFGFPPLALDVINAVNHIMYKCTQAMENYLNERKQKQQEESERKGGSHRADLDRGLEGASSDEIAVGTGKLETLLESQVDKNFDKFE. | 93 |
9 | -5.210 | PF09426.10; G8BMX6_TETPH/6-177; Vacuolar R-SNARE Nyv1 N terminal | ali follow.. | 9 | 77 | KVTKVSMHILDGYDCYYTTSDTLNGSITKDTKLFVCINKITVPKILPIRLLSELKQLAESNDEGGEPLSF---DTDEELSLKVGGIIDQF.. | 163 |
10 | -5.120 | PF15011.6; W5KSN3_ASTMX/12-172; Casein Kinase 2 substrate | ali follow.. | 10 | 17 | ........................RSALVECSPLISSLGNLAEQLRALKSVDLASTPLCHFPDLQPRLQHKLAQAVDTVLGKLSEKIETLQ. | 83 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24. |