Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF08145.12; G1XNV9_ARTOA/148-406; BOP1NT (NUC169) domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .
# Score Template Links and tools%idFirst YENYPHVGYDINGKRIMRPAAGKALDTLLDSIELPKGWTGLVDKNSGAALNLTEEELEIVKKLQRSEITDEGFDPYPDMVEWFSSKVEQMPLSSAPEPKRRFVPSKHEQKRIMKIVKGIREGRILPHKPQAETSQEPEFYDIWADDAPPKPDHVMNIPAPKLPPPTHDESYNPPLEYLPNDKERKEWEEQDPEDRDKNYLPRTHKALRLVPGFNGFIGERFERCLDLYLAPRVRRNKLNIDPASLLPKLPSPDDLKPFPLast
1 -128.000PF08145.12; G1XNV9_ARTOA/148-406; BOP1NT (NUC169) domain  ali  100  1YENYPHVGYDINGKRIMRPAAGKALDTLLDSIELPKGWTGLVDKNSGAALNLTEEELEIVKKLQRSEITDEGFDPYPDMVEWFSSKVEQMPLSSAPEPKRRFVPSKHEQKRIMKIVKGIREGRILPHKPQAETSQEPEFYDIWADDAPPKPDHVMNIPAPKLPPPTHDESYNPPLEYLPNDKERKEWEEQDPEDRDKNYLPRTHKALRLVPGFNGFIGERFERCLDLYLAPRVRRNKLNIDPASLLPKLPSPDDLKPFP 259
2 -6.100PF06591.11; I6ZYJ3_9CAUD/1-152; T4-like phage nuclear disruption protein (Ndd)  ali follow..  15  8..................................................DLNNAGATVIGTIKGGEWTPHKDILSKPGFYFLVSKLDGRPFSNPCVSARFYVGNQRSKQGFSAVLSHIRQRRSQLARTIANNNVPYTVF------------------------------------YLPASKMKPLTTGFGKGQLALAFTRNHHSEYQTLEEMNRMLADNFKFVLQAY............................... 152
3 -6.030PF00101.20; W0DYU9_9GAMM/15-111; Ribulose bisphosphate carboxylase, small chain  ali follow..  11  5....................................................................................................SFLPPLSQDEIYDQIVYIINQGWTPALEHEAPEKASAHYWGMWKLPFFGMRNPDQVLAELDECRRAYPDHL........................................................................................ 75
4 -5.980PF15664.5; E2RC46_CANLF/29-168; Transmembrane protein 252 family  ali follow..  11  37..................................................................................................................................QASKSKGVFTHVLRRHLSHGALPLATVDRPDFYPPAYEESLDAEKQPCPTEGEVSDIPPPLYTEPGLEFEDAADAHPEAPPSYEESVAGGVPAATPLQDAER........................... 138
5 -5.830PF03024.14; JUNO_HUMAN/26-208; Folate receptor family  ali follow..  12  9..............................................................................................................................KRVPSPEDKLYEECIPWKDNACCTLTTSWEAHLDVSPLYNFSLFHCGLLMFYECSPNLGPWIQPVGSLGWEVAPSGQGERVVNVPLCQEDCEEWWEDCRMSYTCKS........................... 126
6 -5.740PF13112.6; Q81HR6_BACCR/91-381; Protein of unknown function (DUF3965 topsan)  ali follow..  15  1....QEIGWYEEANDFM----AQGLAEFVHTSLEYETWDLLTQSVALNYLELTDRDIEIWDRVKFNEKCITD----------------KHLLSHKEVLEFTFF--------MCKRAKSLSKEQLNSDMMSLAMYCNTFVYDLYTHDLLRKYRSQAVLACQRAVLSQISDRLDP-DDYLYVMKEMMEHMTIGVMDRYGHFIGKPFFEMIQVPQHAYYCEELLYICKGIEYKEETLRNYIFIQLHDCLPSF.......... 248
7 -5.710PF02424.15; C5BM31_TERTT/32-314; ApbE family  ali follow..  13  29......................RRLDRELSPWIESSELATLNRLAAKAPQKISSEMLFLVDKLYFSHLTHGAFD------------ITFASVGWFYDYREKKQPSEAQRSALLPAI-NYRWLKLDKTAGTLAYAHDNVRIDLYAVDRVAQLLENAGVRNATISAGGDSQIVGDKRGKPWIIGIKNPRDGGKEEAEAAILLPLENTAISTSGDYERYFIERVHHIIN----PRTGKSVEGVVSVTILGPRGSDTD..... 255
8 -5.660PF04820.14; Q9A4M5_CAUVC/6-464; Tryptophan halogenase  ali follow..  11  152.......AYQFDASLYAQYLRAYSEARGVTRTEGK---SVQQRPNDGFVTGVTLEDGRVVRGLLIEGALQAGYEDWTQWLPCDRAVAAPCASVEAPTPYTRATADRFGWRWRIPLQHRVGNGHVYCSSYVSDDEAARALVENLDGELQQDPRFLRFVTFKNVVAVGLSSGFLEPLE------STSIHLIQVAVTTLLELFPHRGFDPADEDEYNRVMDLEFERIRDFLVLHYHANQRDDSPFWIERREGPIPDSLA... 411
9 -5.640PF04025.12; R6NFQ4_9CLOT/3-75; Domain of unknown function (DUF370 topsan)  ali follow..  12  3.....NIGFGVSASRLVASPESAPIKRIMQDAKEQGTLIDATYGRRTRAVILTDSDHVILSALQPETV............................................................................................................................................................................................... 69
10 -5.450PF12604.8; FIBER_BPT7/358-522; Tail fibre protein gp37 C terminal  ali follow..  15  2.......GGAMTGHVLQLESASDKAHYILSKDGNRNNWYTFHSYVHGTTLTLKQDYAVVNKHFHVG................................................................................................................................................................................................. 78
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;