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Query: PF08224.11; Q8LHX1_ORYSJ/99-327; Domain of unknown function (DUF1719 topsan), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NSSLPTRVAHATKSLISSIFHGNIDEPIRSAVRRFEWFADGANDFLRSVEFGGTPRRYLFFDPLIGRLLAGETLEYKLVQGNNQHLFWIRPNNTAERGVEAKLIFVYNDESVPVNNFFLGMMLQLSECTNIVGTAIKCLQLFAPHFKSTTETVRKELSQLPTQDFSWVPRSHSYHWDSIHSTVTEWFRPNPMCCKHRSQKVCSSGNMEKTYLPDISLESVIDVSLQCQVLast
1 -128.000PF08224.11; Q8LHX1_ORYSJ/99-327; Domain of unknown function (DUF1719 topsan)  ali  100  1NSSLPTRVAHATKSLISSIFHGNIDEPIRSAVRRFEWFADGANDFLRSVEFGGTPRRYLFFDPLIGRLLAGETLEYKLVQGNNQHLFWIRPNNTAERGVEAKLIFVYNDESVPVNNFFLGMMLQLSECTNIVGTAIKCLQLFAPHFKSTTETVRKELSQLPTQDFSWVPRSHSYHWDSIHSTVTEWFRPNPMCCKHRSQKVCSSGNMEKTYLPDISLESVIDVSLQCQV 229
2 -6.730PF17974.1; R5QE63_9FIRM/1234-1424; Galactose-binding domain-like  ali follow..  17  4......RIVQNDSKNITT----NEKGEVVKFEQNFEKSVQGLYPFVVGGIEGVEDNRIHLSEKKMDDVLDGDSVKINGLTQRSTLAYQTIPQNFREPGVTYNVSFDYQAGSDGIYAAAVG............................................................................................................. 127
3 -6.570PF06489.11; A49_VAR67/1-162; Orthopoxvirus A49R protein  ali follow..  12  18.SDMHTKLASITQLVIAKIETIDNDILNNDIVNFIMCRSNLNNPFISFLDTVYTIIDQEIYQELINSLDDNKIIDCIVNKFMSFYKDNLENI------VDAIITLKYIMNNPDFKTTYAEVLGSRIADIDIKQVIRENILQLSNDIR.................................................................................. 158
4 -5.930PF01841.19; Q0W040_METAR/73-192; Transglutaminase-like superfamily  ali follow..  10  3...............................................................KADELTRGSETQAEAVDRIMNFVRTKIPNQASPGSKDAVWSLNHDYGTCVNRANLALALLR------AENIPARYVNGIVSDEQITAPFSISG----TTGYATFRWGKELHAWVEVYYPQKGWVPYDP...................................... 120
5 -5.910PF11219.8; Q21RA2_RHOFT/116-282; Protein of unknown function (DUF3014 topsan)  ali follow..  24........IKPTPGRFMVEERAGGSVINADNSQRYTPLVL----LAESVDTGKAVDLYIRMYPLLQQLIAVIDQLLATPGADEPIQVHLTEVKGSVASLQPWVRYEFSNPAFESLSAGQKIMLRVGVNERRLKVKLSAVR......................................................................................... 167
6 -5.860PF08837.11; F8BS48_OLICO/2-136; Protein of unknown function (DUF1810 topsan)  ali follow..  13  1.............................ADLQRFIDAQWPLDRVLAELRAGQKRTHWMFVFPQIEGLGSSAMALKYAIASREEAAAYLACPLLCGRLEECTALVNAIDGKSVYEIFGSPDDLKFHSSMTLFARVAKGRSLFAAAIEKYFDGRLDEAT....................................................................... 131
7 -5.820PF17485.2; VS48_TBRVC/121-419; Satellite RNA 48 kDa protein  ali follow..  15  12....PESILLAQKIQNSTFKSRGKVTLSQEKIPLVNRFQE-EKELMEEIEES---QPFVANDPRAQHLICKK-----VPRKVGRREILVCPITNDESGIRAEIV-EYNRGHVVKSMRKRIVYERESKPIPIIGIRVSC----DDHTDELASASSVPSEWKPSKNQRAVPCLLQNESGTVVSTKPDWYTPVKVCTHKQYMKVQRAMNIMRALRFHIDSKTLRETWVKCWL 254
8 -5.810PF17741.1; A0A151PBS4_ALLMI/1-268; Family of unknown function (DUF5578 topsan)  ali follow..  15  59.......LARLTAWLRLSYMNGTCLDQLLKAIGIFLSAASGHRYLIEFLEVGGV--------LTLLEILGLSQLKEEDKKESIKLLQLVKELICESYGVRSIAEFMASSKSEKAQRQVQILLDSLGHGNPVYKGLIALLPCTSPHAQQLSLQTLRVVQA...................................................................... 214
9 -5.670PF07804.12; L0DV94_THIND/217-460; HipA-like C-terminal domain  ali follow..  11  51NEWLCLAICRALGLDAAMAEVLTFDDEPVLVVERFDRRWQKDV-------------YRLPQEDTCQALGVPPTRKYQSDGGPGITDVLDFLNGAVSPHADQIVFWLLAAIDGHAKNFSIFL-YKMTPLYDVMSAAP............................................................................................. 184
10 -5.510PF09544.10; H8MQB7_CORCM/16-304; Protein of unknown function (DUF2381 topsan)  ali follow..  12  1..................LGAAAPEQPRVTRERKLVVRAEEATTLHLLRVAPGTVTTVVFNEDILPA-TKALTPLFGQLKVYP-GVMVLRPAVAMPEPSRPLITARFAGEDAPRQ-VSFLLVTDPREVDTVVEVSAEDLGEELALLRGRCVAAEAGLATLRAQ.................................................................. 150

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.