current user: public
If you have questions about the server, please let us know.

Query: PF08334.11; Q0K5X7_CUPNH/46-154; Type II secretion system (T2SS), protein G, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst IMSRPDEARIVAARQDISSVMQALKLYRLDNSRYPTTEQGLAALVAKPTTEPVPNNWKGGGYLEKLPKDPWGHPYQYLNPGVRGEIDVFSFGADGQAGGNGNDADIGNWLast
1 -74.900PF08334.11; Q0K5X7_CUPNH/46-154; Type II secretion system (T2SS), protein G  ali  100  1IMSRPDEARIVAARQDISSVMQALKLYRLDNSRYPTTEQGLAALVAKPTTEPVPNNWKGGGYLEKLPKDPWGHPYQYLNPGVRGEIDVFSFGADGQAGGNGNDADIGNW 109
2 -15.300PF11530.8; Q5F9E2_NEIG1/36-162; Minor type IV pilin, PilX  ali follow..  10  1..SYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLKIFVSGYKMNPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTVWMNSVGDGYKCRDATSAQAYSDT 112
3 -10.900PF16732.5; V4JG32_9GAMM/84-176; Type IV minor pilin ComP, DNA uptake sequence receptor  ali follow..  20  5..SHMLKARRNEGQSLLLDVAARQEQYYGDNRTFTEDMTQL.................................................................... 43
4 -9.010PF16734.5; B0C6E0_ACAM1/135-243; Type IV pilin-like G and H, putative  ali follow..  18  1.........QDTGHTYLGNVLRSQQAEKLVTGRFTTNLQKLE................................................................... 33
5 -8.980PF07596.11; Q7UMN3_RHOBA/54-284; Protein of unknown function (DUF1559 topsan)  ali follow..  11  5.....EAARRMSCSNNIAQLTLATHNYEFSMEHLPPGTTNPTGPIVNTPNGEHIS----PYIEQQGTADDFDLTASVYAPANAYQISAFLCPSFPFGTNDEKTAGLSNY 114
6 -8.510PF08805.11; Q4K7M0_PSEF5/41-171; PilS N terminal  ali follow..  10  1......NSDTAIEQSNISTMVANTKKLKGSAGYGASGANMVPSLINLEGTGTM-------GKNGNTLVNQWNGSVTVVSNGMTFTITESNLPKSA.............. 82
7 -8.470PF00012.20; HSP7E_DROME/54-653; Hsp70 protein  ali follow..  18  117ILMKMKETAEAYLNTPVKNAVVTVPAYFNDSQRQATKDAGVLRVINEPTAAALAYGMDKTEDKIIAVYDLGGGTFDISI--QKGVFEVKSTNGDTLLGGEDFDNHIVNF 232
8 -7.490PF18623.1; A0A0U4VJU2_9GAMM/383-529; TnsE C-terminal domain  ali follow..  14  42.....DGSPRAIKAVRIRYKATEAVLLEVDT---SDGIKMLSTKVLFGSELQDWIDHFLQIRKGVVAKSSWPNELLDSLFGERNHVGINHPKHQGAEAGNIPLESIESW 143
9 -7.400PF12479.8; B5RUK5_DEBHA/176-284; Protein of unknown function (DUF3698 topsan)  ali follow..  12  18........RGSFKDPQTPEICFAIGDYNQRNHGLALGLEDLRMTIKDSKQTLLETNRLEPSKSSPFFLDEWSPRVFFALVLRKYLYQAFLCGTD............... 104
10 -7.320PF12633.7; CYAA_HAEIN/4-209; Adenylate cyclase NT domain  ali follow..  16  9.VSALDQRRFERALQGSGDAFQHV-LLHLNHPQLPGYVIHAPSGIASFLASDYQKKWLTNEYGIHYADHKPSTLKSAVNFHEVFPLGVYVMGSFGS--SQTSSSDLDTW 122
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.