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Query: PF08626.11; C0NZX0_AJECG/5-1447; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PLSPVAPARLRALLLPVGNIKRSRFLNLVKRLQDQNVVRLGDVSPDCRPNRNAFSPMAFPTGMIVYDLSISVPPISHLDLYPFEIFREPLVIIAIADGTELPGPPEGTGTYSQTQSNGTKPCNYPTVEGLQLLQQELNTLKDSHPKSLVQQLLVFDYAAVSKLVTGPDTVIWVPRPEAARSTTVKTVMCDITSRLLGELSGLAERIQEWPTVESPKASSWGPRRKPEVRPPVSEKLQHRMTMPAQLPGANGTFVDASDTNFQPAEHDSPTTFDEITRSIQVSNRVTSSIKASSKPGSKEHSRERMSAQGLGFVAASERSKSRVKGRLNIVMGTLFLQAGRWPDSLKELAEGATIARANSDYIWHAKALESILQCLLMLGWAGMDFRIPQICYPTADKFSKSVSQTPSLSHTELYSIGQSNPENRRVSLQNLANLLPDLANNILNLYTRAANITDEPVPQLVFSETVIRLARILATVYIRDGSLDDSALGNIVMNDSLKFVRSQERPRGTVSLRKSDIASFLFRALPASLGTDVPITDSTPILVGMASVLSSLGLDRKNAFVLQLLFSILIPGLVQARKIGAAEVGIHPAAGLSALNYSAFEMNALDAGPGNMEESIRILLALVGKIYGVPGIMICTDNRRDLSRHNSTAKSETVPEYDSVDSIVDRAFRHSVMNGFGDHTLKVEILKACINLCEALPDFQGVLQFTVDLLQTVKGTLMLLPDSYLGLPVIPLQEQVRLFNNVKRTVAAAKKLGDSNLEAEYWDDFMVRGVELVNSSDFKSPVRRSRTDFGFANVEERLEKKNPFIYSTFSKATTKRSEDLLIAEEPATFKVTLQNPFEFDVEIESLRIDGTGIPFEAAATHGLWLAPFTTQEYYISGVAATEGTLEIRGCTVKVKFCRERIFPIFKNFWKPQKEQKIKRTGLAAKEPFSERPLSWSSNASRSRLGASRKGPEPDIVLIKVIQKQPTVIIHSTSLSQSAIMLLEGETRSFDITLQNISTCPLDFISFSFEDSSTPQLQSALNNKENLPTDMYELELRLSTNPAMTWRRDKLHDYELSIAPGETATFTIDIYGKPGLDNAILKIDYANVCTSLADLPETFYCRQISLPLTVTVNAGVDVTRCDVLPFTSDFAWDNNKLQQSEDSRTSLGDKEAIKSMESSSTPRSITQFREAQFSQTFSRIGLSSFGFGHCLLLLDLRNAWPNPLTVSLFVNENISDGAKSPDDKLKHNPVGIHEIFDELQPGHISRFLLVVPRVYIENAQKPIPSLNVSNKRQFVVSANKLDYEAESSARECFWFREELLKHLRGSWKDVATGRGGVIDLRAIRLNARMVDALRIDDADVTFSLRPYTGDSSNDKTIENGIDSVSQTGHSKFTVKTNTFLTLSATIINRSSKPIHPLLRLQPSLRHTPHAIALDLSKRLAWSGMLQRALPILEPHQTTEVTLGVLast
1 -389.000PF08626.11; C0NZX0_AJECG/5-1447; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit  ali  100  1PLSPVAPARLRALLLPVGNIKRSRFLNLVKRLQDQNVVRLGDVSPDCRPNRNAFSPMAFPTGMIVYDLSISVPPISHLDLYPFEIFREPLVIIAIADGTELPGPPEGTGTYSQTQSNGTKPCNYPTVEGLQLLQQELNTLKDSHPKSLVQQLLVFDYAAVSKLVTGPDTVIWVPRPEAARSTTVKTVMCDITSRLLGELSGLAERIQEWPTVESPKASSWGPRRKPEVRPPVSEKLQHRMTMPAQLPGANGTFVDASDTNFQPAEHDSPTTFDEITRSIQVSNRVTSSIKASSKPGSKEHSRERMSAQGLGFVAASERSKSRVKGRLNIVMGTLFLQAGRWPDSLKELAEGATIARANSDYIWHAKALESILQCLLMLGWAGMDFRIPQICYPTADKFSKSVSQTPSLSHTELYSIGQSNPENRRVSLQNLANLLPDLANNILNLYTRAANITDEPVPQLVFSETVIRLARILATVYIRDGSLDDSALGNIVMNDSLKFVRSQERPRGTVSLRKSDIASFLFRALPASLGTDVPITDSTPILVGMASVLSSLGLDRKNAFVLQLLFSILIPGLVQARKIGAAEVGIHPAAGLSALNYSAFEMNALDAGPGNMEESIRILLALVGKIYGVPGIMICTDNRRDLSRHNSTAKSETVPEYDSVDSIVDRAFRHSVMNGFGDHTLKVEILKACINLCEALPDFQGVLQFTVDLLQTVKGTLMLLPDSYLGLPVIPLQEQVRLFNNVKRTVAAAKKLGDSNLEAEYWDDFMVRGVELVNSSDFKSPVRRSRTDFGFANVEERLEKKNPFIYSTFSKATTKRSEDLLIAEEPATFKVTLQNPFEFDVEIESLRIDGTGIPFEAAATHGLWLAPFTTQEYYISGVAATEGTLEIRGCTVKVKFCRERIFPIFKNFWKPQKEQKIKRTGLAAKEPFSERPLSWSSNASRSRLGASRKGPEPDIVLIKVIQKQPTVIIHSTSLSQSAIMLLEGETRSFDITLQNISTCPLDFISFSFEDSSTPQLQSALNNKENLPTDMYELELRLSTNPAMTWRRDKLHDYELSIAPGETATFTIDIYGKPGLDNAILKIDYANVCTSLADLPETFYCRQISLPLTVTVNAGVDVTRCDVLPFTSDFAWDNNKLQQSEDSRTSLGDKEAIKSMESSSTPRSITQFREAQFSQTFSRIGLSSFGFGHCLLLLDLRNAWPNPLTVSLFVNENISDGAKSPDDKLKHNPVGIHEIFDELQPGHISRFLLVVPRVYIENAQKPIPSLNVSNKRQFVVSANKLDYEAESSARECFWFREELLKHLRGSWKDVATGRGGVIDLRAIRLNARMVDALRIDDADVTFSLRPYTGDSSNDKTIENGIDSVSQTGHSKFTVKTNTFLTLSATIINRSSKPIHPLLRLQPSLRHTPHAIALDLSKRLAWSGMLQRALPILEPHQTTEVTLGV 1443
2 -28.500PF07919.12; C4JTF4_UNCRE/662-1266; Gryzun, putative trafficking through Golgi  ali follow..  11  21.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSEGNVGEPLLAQLVITSTAHEAIRLSEVIVAFEGSLRPMTGTVDLAFPPGQTKAFNLTCIPREAGKVQVTSITLMI---------------------EDEMFNLTSVISSQSFKDPVWWSPGIKGAISRRIGKDRDTITCDILPKPPKVRI---LTPTLHDHYYTDEHAVLDIQIENEEDEAAESIEARLLGQSEDSAQIHWVDDPEACVQPRDSSPTSPTDDSGSLGQVKRKEIG-ALDSGGRKAISLNVTNTSVPLEYGLEISAFYHLLSDPETP------FKTVTLDLPFIRPFEA-NYELMPRVHPGPWPDFFHVDEPKLIDESEPR--------------------------------AHGLQQRWCLDCKLISFAHETLLID-KVSVAVTGIEGGLVRHIGPEIHTGNVEAAELHPEQVRESQ-------------------------FILELQRLTLGDRQTTT--------LNLALEVKWRRQDAEAPSSSAVELFIPTTTLVPRFVIPMGEPRVLATVTR------------------------ASALPNFIHLDYTLENPSIHFLTFTITM-------------EASDQFAFSGPKSLAVQ-LVPLSRHTVRYNL 561
3 -13.200PF00927.22; EPB42_HUMAN/588-686; Transglutaminase family, C-terminal ig like domain  ali follow..  19  12.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EQYQPLTASVSLQNSLDAPMEDCVISILGRGLIHRERSYRFRSVWPENTMCAKFQFTPTHVGLQRLT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 78
4 -12.000PF06159.13; J3KCX7_COCIM/67-339; Protein of unknown function (DUF974 topsan)  ali follow..  14  2............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MLPPAFGSAYVGETFSCSLSANNDASRVVTSIRILAEMQTPSQVVPLELYPSSDDND----------------------TKSGGIAQVESMQKIVR-LKEEGNHVLAVGVSYTETMITPSSDAHGSVQRTFRKLYQFVAQPCLNVR--------------------------------------------TKATELPPQEVDNRSLGPYGKTKLYRFALEAQLENVGDGIITLG-AVTLNPKPPFKSRSLNWDFESSADKESIPTLSPRDVLQIAFIVE------------------------QEHGQQDGLETLQKDMNREGRATLGQLSLEWR-SALGDRGFLTTGNL......................................................................................................................... 271
5 -11.900PF12739.7; E9PWG2_MOUSE/157-604; ER-Golgi trafficking TRAPP I complex 85 kDa subunit  ali follow..  3...............PM-----EQFSKLSQEQHRIQHNNDYSYPKWFIPNTLKY--------YVLLHDVTSGDEQRAESI--YEEMKQKYGLLKINSRAPNRKNSDSNLLSLDGLDNEVKVDGLPNNFRIHPLQIDQCGDPPNNTDGSESKSASSVHETKKASTAVIRGACLTLTDHDRIRQFIQEFT---FRGLLPHIEKTIRQLNDQ----------------------------------------------------------------------LISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRP-------------------------------------------------YPAHYMDTAIQTYRDICKNM----------VLAERCVLLSAEILKSQSKYSEAAALLI---------------RLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAG-FSKAGQKKHALRCYCQAMQVY.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 435
6 -10.800PF12862.7; APC5_SCHPO/263-353; Anaphase-promoting complex subunit 5  ali follow..  14  28..........................................................................................................................................................................................................................................................................................................................IMHSDEKVSYQYALLNLAMLQADFGCNEEALHAIEDTINTARESGDTACLNFALAWM................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 84
7 -10.500PF14874.6; Q4DUQ4_TRYCC/1589-1690; Flagellar-associated PapD-like  ali follow..  17  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VPTLSVMPSVLSFGRVIR--GNRYALPVVFTNTSTVPCR-YRVTLPTECKDILRVHYPRH--------------------------------FLAPGLTVMAQVEISGTQPLGAMSFSLNVTHEGGL------------IPVKVEIET............................................................................................................................................................................................................................................................................................................................................ 101
8 -10.300PF10633.9; Q67M97_SYMTH/263-339; NPCBM-associated, NEW3 domain of alpha-galactosidase  ali follow..  16  4.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GRKNGVTLEVKNTGTTEITGINFASTLPP--------------------------------WTATFSPDSIDALAPGESRQVTVEVTPNSKALAGDYLVTLRARS................................................................................................................................................................................................................................................................................................................................................................... 77
9 -10.200PF15780.5; G3VKZ4_SARHA/34-131; Abnormal spindle-like microcephaly-assoc`d, ASPM-SPD-2-Hydin  ali follow..  22  21......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VGVSRTLPLVLDNPNEEGVEVSVARLPAADKGFSISPQS-CALQSKERISLSITWTPAKEGRVR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 83
10 -10.000PF13424.6; Q4DK03_TRYCC/687-760; Tetratricopeptide repeat  ali follow..  17  1...................................................................................................................................................................................................................................................................................................................................HQRPLQNYAQLKCQLGDMLSALSLQETELEIAKEFGDTRATSRCMGAIALT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 51
11 -9.330PF12371.8; A9UVP6_MONBE/19-102; Transmembrane protein 131-like  ali follow..  16  15......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LCKVAERVVTVVNG-NPRADLHLYSISSNSNDFHSSWFEHAVVAPGDNTTFTIAFMSETLGNITLLT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 84
12 -9.050PF06933.11; O44418_CHIPA/1-756; Special lobe-specific silk protein SSP160  ali follow..  2........NIKVILVFFAQVAEGG----ISLLFSLFEVMVSVVFDVKSFT----SLSTPTCNSTVPSFATRVGGGRFS----------------TASFNMIAMISANVQAIQSGSGSTSGSSSSSTTSTSNSTTTTSNSTTTTTNSTTSSN----TSSGLTSSASVVSLIDTIAWVYQDSSVGIAYLMVSILALFYGQSVSAPPYPDLGIPALPANCSGPGVPQSVQIRAAIAYVNITIYFINMTGQQFEDLQGPVATDCGCPNTTSVAPLVLEWEAILAALQALANSTASANSTTSSNSTTTTTTNSTSTTTTNSTTTTNSTSSSNSSTIAGCIDISANFTIALQSLQALLLQESTCAPAL--SPCKPGKTASGCAKSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGEAAKSGVRRYRKNIKYVYIPPVMASLNAYAALMASLSESISSQS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 459
13 -9.000PF05753.14; Q9VUZ0_DROME/9-186; Translocon-associated protein beta (TRAPB)  ali follow..  12  10............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CLSEDETRARLLVSKQILNKY---LVEKSDLLVRYTIFNVGSGAA--TKVRLVDSGFHPEAFDVVGGQPTAV---------------------------RIAPQTNFTHVLVVRGYFNFTAAEVSYKAVEESETLQLAVSS.......................................................................................................................................................................................................................................................................................................................................................... 124

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.