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Query: PF08943.10; F0M011_VIBFN/16-316; CsiD, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst FTVQPHPTNPRLQVVTLARSLLEKFNDLTCEWDLQSIEYKPFLRFAVADALDKASDYQLGSLLKRIIDDRDQGAFLLEADKDVQAEFEDTETQRRYFVKLSTAISHLIGLPNFDAMYGKYYARFTVKNVDNSDSYLRQAHRRMELHNDGTYVNERTDFVLMMKMHESHMEGGDSLLLHLDDWQDLGKFYNHPMAKQDITWGAPPSKNTGYDIAHPVFFEEDADGKPHMLFIDQFAKPKNVREGLYLYEMGESLEHDPACFNVRVNVGSMLVIHNHRWLHGRDKFVPHPELSRELLRQRGYFLast
1 -105.000PF08943.10; F0M011_VIBFN/16-316; CsiD  ali  100  1FTVQPHPTNPRLQVVTLARSLLEKFNDLTCEWDLQSIEYKPFLRFAVADALDKASDYQLGSLLKRIIDDRDQGAFLLEADKDVQAEFEDTETQRRYFVKLSTAISHLIGLPNFDAMYGKYYARFTVKNVDNSDSYLRQAHRRMELHNDGTYVNERTDFVLMMKMHESHMEGGDSLLLHLDDWQDLGKFYNHPMAKQDITWGAPPSKNTGYDIAHPVFFEEDADGKPHMLFIDQFAKPKNVREGLYLYEMGESLEHDPACFNVRVNVGSMLVIHNHRWLHGRDKFVPHPELSRELLRQRGYF 301
2 -30.900PF02668.16; PTLD_STRAW/6-290; Taurine catabolism dioxygenase TauD, TfdA family  ali follow..  9  18....................................................DFSGTIDDTQVEEIWQALDQHLVLVFRG--------HKDPSNDDLLMFARRFGHVPKTGLTTGASPDHILLISNILDENGQKIGVGNAEWMDWHTDYSFRPRVSRIGFLAAVELPPSGGGQTLFTDMYTAYESLPDDLRQRLHSYRARHSFVAPEDGTATVHQLIARNPRTGRRAVLNTKRILELDVTSSKEVLQQLFAKPGEPELTYAHEWLPGDIVMWDQLGTVHAKRAF--DPTERRLLRKV.... 284
3 -12.300PF10014.9; A9IE89_BORPD/63-254; 2OG-Fe dioxygenase  ali follow..  12  61....................................................................................APIEPSIASGKVLMSALELCRATFSGLAPFNHWHIEVHQFRIVATSAEGLPTPE-----GIHRDGV------SFVFMMLVNRVNVLNGETGIYDR--------------------------------------------------------------------------DRQELARYTLADPLDAAIVNDERTMHGVTPIDPARQGYRDVLVI.... 191
4 -12.200PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH)  ali follow..  6  1..........................................ARLAGDCATQDGRRSVLAEICEALATG---PGVAVFKRAFTDTRVIDEASGIFNEIIEEQHFAAYYGNAIIALVSEAWLGP--NYQMTAQVNRVNPGGASQSPHRDYHLGFQTSALQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTY--------------------------------------------------------FEENHVQLPLEKGDVVFFNP-ALFHAAGS--NRSAGIKRV....... 238
5 -7.990PF11004.8; D5WZ42_THIK1/22-295; 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase  ali follow..  11  7..........................GVEHLLEGGHVLCFPQLHFELSASERRFLTPSISDGKAKNISLRDDGSIR------ASGSPQDQAELRDMIQRFSHQAQSLVDRLFPHYQGKLRAAKASYRPIQIEGRETSWRKDDTRLHVDAFPSNPIHGVRLLRVFTNLNPEGRPRQWRVGEPFPEFLQRFAPRL-------------TPPVPGSAAVLRALKITKSHRTDYDHYMLQLHDKMKA------DLAYQKDAPQRSVDFAPGTTWVVFSDQVLHGQYMMEPHTAPLKVLEDLMG.. 271
6 -7.380PF13759.6; Q1GR96_SPHAL/97-197; Putative 2OG-Fe(II) oxygenase  ali follow..  13  26.......................................................................................................................................................................................................................TFYVAVPPGSGALKLED----PRLPMLMAAPGRTDDAPEYLRPFVYAEPAAGRVFLWESW-LRHEVMPHAGKGE------RISISF 100
7 -6.700PF09859.9; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA  ali follow..  10  68........................................................................................................................................YVPGDFNCLHQDLYGDLAFPQVAILLSEPGKDFTGGEFALTEQRP------------------------------------------------------------------------RMQSRVEVVPLRQGDAVAFARVNLRHGVSRLRSGM---RHTVGII... 168
8 -6.570PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily  ali follow..  15  109.......................................................................................................................................................................................................................CVVNFYKKAGRNGMHIDKDESDEAMSMGSPVISFSHYPDPHEAVPIVRLESGDALVFGGRTVVHALTRVYNNTQPSWLRMRLNLTF 210
9 -6.490PF01067.22; W5NF66_LEPOC/363-507; Calpain large subunit, domain III  ali follow..  9  4....................................................................................................................................................................SVGSTAGGQFAIKLEEVDDDPHDGEEGCTFLVGLMQKDTRKEKRFGRDLNTVGFAIYEVPKQYKGRTNIHLGPDILLRQRAVATSNTFINLREVCNRMKLPPGEYIIVPSTFEPHKKGSF---------VLRF.... 139
10 -6.250PF03432.14; Q9Z361_STAEP/8-242; Relaxase/Mobilisation nuclease domain  ali follow..  8  84..............................................................................................................................................VYTHADTDHVHN-------IVMNSIDLETGKKFNNNKQALRNVRNFNDEVCMEHGLSVPDKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMNEFKDHLNQHG--IEIERVTPKSITYVEDKKVRGRKDYNKGGIEDGFERQ..... 235
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.