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Query: PF09074.10; RE107_YEAST/19-214; Mer2, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SEHSLMITETSSPFRSIFSHSGKVANAGALEESDKQILEWAGKLELESMELRENSDKLIKVLNENSKTLCKSLNKFNQLLEQDAATNGNVKTLIKDLASQIENQLDKVSTAMLSKGDEKKTKSDSSYRQVLVEEISRYNSKITRHVTNKQHETEKSMRCTQEMLFNVGSQLEDVHKVLLSLSKDMHSLQTRQTALELast
1 -83.600PF09074.10; RE107_YEAST/19-214; Mer2  ali  100  1SEHSLMITETSSPFRSIFSHSGKVANAGALEESDKQILEWAGKLELESMELRENSDKLIKVLNENSKTLCKSLNKFNQLLEQDAATNGNVKTLIKDLASQIENQLDKVSTAMLSKGDEKKTKSDSSYRQVLVEEISRYNSKITRHVTNKQHETEKSMRCTQEMLFNVGSQLEDVHKVLLSLSKDMHSLQTRQTALE 196
2 -8.330PF02520.17; A8X0P8_CAEBR/177-285; Domain of unknown function DUF148 topsan  ali follow..  10  12........................NPGISFQQKEDKLVKWAEANNLTE-NLQLHKEQRSKNISAVIERLAEAKVEVDKVNADLSLTKTQRDEKIDELKKTYPQEIPTI........................................................................................ 101
3 -8.170PF10498.9; IFT57_XENTR/25-383; Intra-flagellar transport protein 57  ali follow..  17  218......................................DWRVHVD----QMHQHRDGIDTSLKETKGYLDKLHNEVAKALEKVSSREKYINNQLEQLVQEYRSVQAQL----------SEAKERYQQASGGVTERTRILAEITEELEKVKQEMEEKGSSMTD-----GAPLVKIKQALTKLKHEIVQMDIRTGVVE 356
4 -7.310PF11101.8; F7YMK9_VIBA7/21-245; Protein of unknown function (DUF2884 topsan)  ali follow..  11  59..................................NASLPKVKQMASDGLALPNAFDSAKQSIATFFANIESRYYKDGELVLPAQTFESMTQTWADDFEKAKALFNKEFISGAFDALSLKMREEGGLNITKLTDTMADLKVKLAERIQENAATIQKESRDFCESLNDMVEQEQQLHQKIPVLKD............. 221
5 -7.020PF15984.5; Q8XQX4_RALSO/108-304; Bacterial collagen, middle region  ali follow..  8  26..................................................LGAGVQDGLGSIGSNPNPIGTTVASTGNVVTGVGNTVTSAGTLVGGLGTGQLSPLAPVTTPLAGALTQVGQAVTNAGTTLGTTLSTGPVEQLTQQLSTAIVPLTSQIIGGTQTVGATTGMGTPANSLLGTLGGAIANGGS...... 165
6 -6.940PF03519.14; W0HTY6_9GAMM/17-94; Invasion protein B family  ali follow..  18  11............DSHSTIALDFNDMPSIYISSSDDDIWLWSRIAEYQDTILEQCSYNLLKELLEGAEYIRGGHFSLAE...................................................................................................................... 76
7 -6.850PF09787.9; W4YU02_STRPU/423-727; Golgin subfamily A member 5  ali follow..  13  1............................SAEEAKQELTDYKQKAT-RILQSKDK---LISSLKEGVEEIKNERDMLREELQQANIKIEQLKMDLQEIESLQQMESESLQEQLRDRQSLRETEADLARKCEELRYAEEELHRQRLDLQAKIKDREDDIQRLRNQLKTKSMSSSSETELEGRLHALTESLIQKQTMLE 185
8 -6.820PF06008.14; LAMA1_HUMAN/1575-1831; Laminin Domain I  ali follow..  8  60..................................TRMLASTQKVNRATERIFKESQDLAIAIERLQMSITEIMEKTTLNQEDFLLPNSTLQNMQQNGTSLLEIMQIRDFTQLHQNATLELKAAEDLLSQIQENKPLEELEVLKEAASHVLSKHNNELKAAEALVREAEAKMQESNHLLLMVNANLREFSDKKLHVQ 226
9 -6.780PF05064.13; Q6FPU8_CANGA/663-776; Nsp1-like C-terminal region  ali follow..  19  16..............................KTLDDLVTKWTNQLSSASKHFDQYSKRIISQLYTEAVNAEQAQNKIDQSLQYIERQQEELETFLDNYESRTEALLSD......................................................................................... 105
10 -6.600PF07889.12; B6TRT4_MAIZE/96-218; Protein of unknown function (DUF1664 topsan)  ali follow..  12  23.....................................................KGISFSDLMYVTKRNMANAVSSMTKHLEQVQSSLAAAKRHLTQRIEKLDDKLDQQKALS--------------------------------------GQIRDDVTDARLKLENIGSEIKNIKELVWGLDGKIDSMEAKQ.... 123
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.