current user: public

If you have questions about the server, please let us know.

Query: PF09084.11; M7UJG4_BOTF1/16-238; NMT1/THI5 like, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220
# Score Template Links and tools%idFirst PYHAPVYLAQKLGYFADEGIKVALLEPNDPSDVTEIIGSGKVDMGFKAMIHTLAAKARDFPVTSIGSLLDEPFTGVVYLKDSGITTDFRSLKGKKIGYVGEFGKIQIDELTKYYGMEPTDYEAVRCGMNVSKAIIEGSIHAGIGLENVQMVELEEWLANQGRPRSDVQMLRIDELAELGCCCFCSILYIANDAFIAQNPEKVRKFMKAVKRATDHVLGSPSDALast
1 -94.300PF09084.11; M7UJG4_BOTF1/16-238; NMT1/THI5 like  ali  100  1PYHAPVYLAQKLGYFADEGIKVALLEPNDPSDVTEIIGSGKVDMGFKAMIHTLAAKARDFPVTSIGSLLDEPFTGVVYLKDSGITTDFRSLKGKKIGYVGEFGKIQIDELTKYYGMEPTDYEAVRCGMNVSKAIIEGSIHAGIGLENVQMVELEEWLANQGRPRSDVQMLRIDELAELGCCCFCSILYIANDAFIAQNPEKVRKFMKAVKRATDHVLGSPSDA 223
2 -38.200PF13379.6; B0UDN0_METS4/41-302; NMT1-like family  ali follow..  14  17.DAGPLFVAKEKGFFAKHGMEVEVLKQASWGTTRDNLVLGSEGNGIDGAHILTTQNNVPVPMHILARLNLNGQCISVAKKVFRVATDKKKAAGKSVKAAGGTHDLWIRYWLAAGGIDPDDIETIVVPPQMVANMKVGTMDCFCVGEPWNAQLVQQGLGYTALTTGEL------------WKDHPEKAFAMRADWVQKYPNATRALLMAVIEAQQWC-ENRDEF 257
3 -33.300PF14503.6; F4GIV3_SPHCD/83-314; YhfZ C-terminal domain  ali follow..  28......LATGISTSMNKGKMRTSLVFSRGADNRLEGILEQRYDFAVVSRLAAEHYVEKQYPIVIAHNFGPHTQHALVTCRNGVNLK-AQDFSNCRIGVDEASTD---QRILSHRFFRDTQVTYVPIVYQVIPALKGNDIDATIWNADALDARKNGIFSFPLEQISQDDTEAAI--------------------IHLAGKPFISRILAELLNPDEVLEYQKKVM 224
4 -26.300PF12916.7; A4YDV4_METS5/1-196; Protein of unknown function (DUF3834 topsan)  ali follow..  11  2.....................LKVIAAPGPVSYPMIAST------KNKDIIIDFGKDGSADVILDSTVSLVRRGLRTDYVTIKGLMVVSPDVGKRIGVWGSAADVLTRALLDKKGIRGEVVYADEMP-RLVEMLNKKEVDSIVIASPFAKGKTFEELLG------------------------------IPGSCGASVNANHEEFISAYSEGIELMKQDPQGV 169
5 -17.400PF02621.14; B9M1W5_GEODF/4-263; Menaquinone biosynthesis  ali follow..  15  9PNDTFIFHALVHGLVSKPGLIFNERL-EDVETLNRLVLEKTLDVSKISYHLLGYVREDYCLLSAGGALGRGCGPLVVSKKY----ESMDQLKGKRIALPGYTTAALLLRLFDPALTDIIYLPF-----RIMGAIADGSVDAGVII--------ESRFTYAGLGLVKLLDLGDWWERETGHPIPLGGIVAKRS-----GSEVIAGINSLLRQSVELAFAYPGKA 212
6 -15.400PF16868.5; Q2SNF1_HAHCH/34-328; NMT1-like family  ali follow..  12  12PVGVAIATLTKVKLQPTHKIGISAISSAGSAENIKLMRDNEAQFSILQGLFGKYAEGKQRNVRSITMLWQNVEHFVLYVKTGTISD-LVNAKGERLGSKNSGTIESNRTILANFGLDLDKDFDLLY-GPSSQALQDGKVVGMITLLSFTPEQIQQADNGFDLWTPFTVKAGVYPGVNKDIVTIAQPNFLAVRDDIDE--ETVYLLTKAIYENLPFLNS..... 262
7 -14.800PF02916.15; Q8DZD3_STRA5/72-187; DNA polymerase processivity factor  ali follow..  14  7..............................TTIILVLASIFVATTLYG----FKSTIDLTNNLNKTASYSEIEMSVVVPKDSKITN-IEAVSKLAAPVKTSNITDLIEHIKSEKGISITPQKTDSYQ-DAYNRIKSGDSQAMV................................................................................ 115
8 -14.600PF12974.7; D0KYK9_HALNC/62-317; ABC transporter, phosphonate, periplasmic substrate-binding protein  ali follow..  25...............EKNPGYSFHIEPMFLSELAAAVRENRLDFVLTQPLQFVQLAQN-DDVWPLATMVVKTPSAIIVRADRSDLQHVSDLKNKIVAGASKGAWLLGLDTLVRAGIDPKTLFTGLPMFQIVEAVWQHRADAGV----IRAGFLEQLESQGAVKKGEFRVLDPSQYSDYSTELVPEWPFSATSSV---DRVFAEKVARDLMG............ 231
9 -14.500PF00497.20; A6X2Q5_OCHA4/44-271; Bacterial extracellular solute-binding proteins, family 3  ali follow..  13  21...AGFDVELMEGVAKQLGLAAEFKDTR--TSLITGARANHFDVIASA----LYVTPERQKILNFIPYIKAGSSLLVLKDAKFRPANEKELCGKIIGSMQGASKALSEDYCAKNNLGAIETREFDTDAQVTQALRSGSVDVEFMDNVVAAELLKKFPDDYAVTSSA-----LIYPIMVGV------------ATTPQNKELFNAMNDAFAQ............ 211
10 -10.200PF03180.14; M9X5A7_MANHA/27-263; NLPA lipoprotein  ali follow..  11  10..EHKVMEVAAKIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQEKGYKLVPVGNTFVYPIAAY-----SKKIKSLAELDGDTIAVPNDTNLARALILLEKQDL---------IKLRADAGLKATSVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKD--NQHSEAVKDLVKAYQT............ 218
11 -9.820PF12727.7; A0LFW2_SYNFM/425-616; PBP superfamily domain  ali follow..  7...............RDGRMQLSSGN-VGSLGGLMAVRRAQTHLAGSHLLD-YVERYLQGVPIRLVTLAVRQQGLLVRRGNPAGVRGVRDLARPDVAFIGSGTRILFDYCLRKEELAPEEIREEFTHMAIAVTVLSGRADAGMAIFAAA.......................................................................... 155
12 -9.140PF01634.18; R4XER3_TAPDE/58-228; ATP phosphoribosyltransferase  ali follow..  15  1............................PAADIPRFVGEGNVDLGITGQDVLAESIAMHIKVDELLDLAFGKCRLQVQVPANGEYQTAESLIGKRVVTS----DFLVKDYFRKLESQQKGRELKLEEITTEIKYVGGSVEAACALGVADGIV-----------VESGETMRAAGLKAIETVMDTSCCLIQSASPRHP--ELIKTILSRVQ............. 170

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.