Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF09308.10; F7YS51_VIBA7/41-278; LuxQ, periplasmic, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .
# Score Template Links and tools%idFirst SSKIIAQEVQRTASQTSSLIQNLFNFRLSLLQINQDSSAKNAGLVKAIRKGDNDSIDQFFFGVDQLEVANTPDIRFISDSDSLMWEDGNAQFYGIEQNELVNMSRKVALSNNWHMIKSPSQLGYAYLMVRRTPVIDSQSGEVIGFLHLATVLNNNYVLAETLREGSNSENLVMTTGEKVLASTINGDETYTERDVLEDNFDAYSFADYMVSRTALTIEGVPIYINVLSVQSNENVLQLLast
1 -80.500PF09308.10; F7YS51_VIBA7/41-278; LuxQ, periplasmic  ali  100  1SSKIIAQEVQRTASQTSSLIQNLFNFRLSLLQINQDSSAKNAGLVKAIRKGDNDSIDQFFFGVDQLEVANTPDIRFISDSDSLMWEDGNAQFYGIEQNELVNMSRKVALSNNWHMIKSPSQLGYAYLMVRRTPVIDSQSGEVIGFLHLATVLNNNYVLAETLREGSNSENLVMTTGEKVLASTINGDETYTERDVLEDNFDAYSFADYMVSRTALTIEGVPIYINVLSVQSNENVLQL 238
2 -39.700PF14827.6; A9B1A1_HERA2/45-312; Double sensory domain of two-component sensor kinase  ali follow..  9  1.....QNQLNQSLRTSATNTGVGLETIEAQILDNLRLIVTSPATAEAFSKNDVDQVEQIINNAFN---YFKPSRLIALNADGQVLVDVLSTELAKDLIQ--------AVLRGQVDDYGDKYASLLTMFFVVAPVKG-SSEQVVGAIIYAEPLERI--VNEELPPRNGATITAILNSDGLTSNPPQEADELLID---ANQIEQIKASQTGTLFTTIQRGDTSYQVMYSPMRIRRALNGY 216
3 -19.200PF02743.18; D3EMN3_GEOS4/45-297; Cache domain  ali follow..  9  1..ASMRKQTRLNIQGTLLQIKDNVTYKMNDIVQTSATLYDNRTLVLSLRSFE-RMNQVIIPKLESASKA--IGLNSVYFHNESVN--EVWRDDSTRDIVDTAWYRDIPAEQMLWKQVEEDERDGRISLIRR---IVDNNPAEVGIMRFSVRKSELFDSVNFKKLGAGSELIVLDGAGEAVFTS....................................................... 173
4 -13.700PF17202.4; E6U3D4_ETHHY/87-192; Single cache domain 3  ali follow..  6  2......................................................................................................................................................RVTGDTAIVDMVQRETGY-AATIYEGVWSVSTNIANGNQRLLGFPMDKAASSSVLTRGKQYLGIVKIADVPYIGYYVPLKDADG.... 84
5 -13.600PF10144.9; SMP_YERPE/1-162; Bacterial virulence factor haemolysin  ali follow..  7  34............SLSHQLARSEQVEELAQTLAKQVAFSLSPI-MDSGDDNIDSQKVDAILQQLTQ---SSRILDASVYQIDGTLVASAGENVKVRDRLALDGKRPGSYF-----------------NHQIVEMIA--GNSGPSGFLRMTLDTHVLATESKQV............................................................................ 160
6 -13.500PF10388.9; A8FCM0_BACP2/240-406; EAL-domain associated signalling protein domain  ali follow..  3  3DRNKRKDQLREEFQQFIAHEKKKLQTVYEHSETFYKRIHQAVTTLKKSCSTNDELIQKLALELTD-----CSFRIYMCNEEGFQITGNQPEYIEKNWSWRPYFLANILQMRMSGKGFFSDLETGERIRTFSYPLEGD------MYLFIDLPYAYLYEQDGLI............................................................................ 167
7 -12.600PF09984.9; B7VK74_VIBTL/31-175; Uncharacterised signal transduction histidine kinase domain (DUF2222 topsan)  ali follow..  11  2.................NRYQDLEGQVVNTGTSIIEPLAIASES--GMKLESRESVRQLISYAHR-KNSKLVRSIAVFDERHELFVTSNF----------HPDFESLTYPKDKPIPHLSSSNLLDNTLILRTPIIAEGANQAIGYIAIELDLSS.................................................................................... 136
8 -10.600PF17152.4; F9ZZV9_METMM/42-151; Periplasmic sensor domain  ali follow..  14  3........................RALLVNAKSTANMIGFN--ASAALVFEDGPSATDVLKAL---RNSPNVIAAQLYTVRGEPIARYSADSSDIDLPRLLSEPDKQRNQSHWK------------THTLIQPIF---QTEVVGYLAL.......................................................................................... 109
9 -9.540PF16736.5; Q65G91_BACLD/33-148; Single Cache-like  ali follow..  10  1..SSYDAKLSSHIEKEAALVASLANG----------------------ENMKSSEQGAILEKASRELDSR----VSLIDTKGQVLFHFGGRA--EEQSVIKEALESDLNGEGGGFRINPDDES---VYRYVQPL--KDDGNVNGYILIST........................................................................................ 115
10 -9.360PF05228.13; Q7CGN3_YERPE/1-161; CHASE4 domain  ali follow..  8  2..........................QQDSLKTRIKDNAFWGDAYQHLHVKMDTDWAFISQNMGPLYKDFSLEGVFVIDGQGKTRYSVINGQLVNTDLQTPLIDIARQRAEKPYIAVDTLEIAGQPALIAAAALTPGEDPRVQSVLVFINILTP--AELSALGENYGIHNLRM................................................................. 160
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.