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Query: PF09325.10; A8WVN0_CAEBR/231-466; Vps5 C terminal like, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VKKIFKNFQVVFSKMAFHMEEGDRWFEQVQSQIDELDEALRKLYTVTESLVASRREMATSGELLGKALSMLAACEESTSLSRALSALTDVTESVSNAWGKQAEIDNAKFSEAIYEYIMLISALKDVFGERVRAWQQWQDAQQTLSRKRDQKTKIDLAAGGRNEKSDQLKAEIEETVLRIDQLEQHFGELSKAIREEVARFDTDRKTDMKKILIDYMESMIHTHTEMLQLWEKFEPQLast
1 -73.000PF09325.10; A8WVN0_CAEBR/231-466; Vps5 C terminal like  ali  100  1VKKIFKNFQVVFSKMAFHMEEGDRWFEQVQSQIDELDEALRKLYTVTESLVASRREMATSGELLGKALSMLAACEESTSLSRALSALTDVTESVSNAWGKQAEIDNAKFSEAIYEYIMLISALKDVFGERVRAWQQWQDAQQTLSRKRDQKTKIDLAAGGRNEKSDQLKAEIEETVLRIDQLEQHFGELSKAIREEVARFDTDRKTDMKKILIDYMESMIHTHTEMLQLWEKFEPQ 236
2 -44.400PF06730.11; Q9VK91_DROME/1-222; FAM92 protein  ali follow..  13  4............RGKLSFLNTKDDRVKIINERINITERHLMEMCSSFALVTRKMAKYRDSFDELAKSVKSYADDEENESLCQGLKSFTNAVTIMGDYMDINVHRLEHKIVNELAQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSKFSA-----------------NNSAADSELFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIISDFILIAMKQHTKALEILSASYYD 211
3 -42.300PF10456.9; SNX9_MOUSE/358-593; WASP-binding domain of Sorting nexin protein  ali follow..  16  34.................DLIEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRTGPLPKEYQKIGKALQSLAAVQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGAHKGAIEKVKESDKLVATSKITPQDK-------------------------QTMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSR 234
4 -22.500PF06456.13; ICA1L_MOUSE/15-242; Arfaptin-like domain  ali follow..  12  5MQKNYWRTKQVFIKATGKKEDEDAELDAKLEVFHSIQETCNELVKIVEKYQLRLNVISEEENELGLFLKFQAERDSTQA-GEMMDAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTLVTINRMERARTEYRGALLWMKDASQELDP----------DTFKQMEKFRKVQNQVRNSKDSFDKLKKDVCQKVDLLGASRCNMLSHSLTTYQRTLLGFWEKTAQMM...... 228
5 -15.400PF03114.18; SH3G3_DROME/6-241; BAR domain  ali follow..  11  1LKKQINKANQYMTEKGAEGTKLDMDFMEMERKTDVTVELVEELQLKTKEFLQKSNTYPQPEGLLAECMLTYGK-EDNSVFAQALVEFGEALKQMADVKYSLDDNIKQNFLEPLHHMQ-------------TKDLKEVMHHRKKLQGRRLDFDCKRRR----------------AKDDEIRGAEDKFGESLQLAQVGMFNLLEND-TEHVSQLVTFAEALYDFHSQCADVLRGLQET 233
6 -14.900PF16746.5; F1Q973_DANRE/5-238; BAR domain of APPL family  ali follow..  13  17.........................IEEVEGDVCELESKLDKLVKLCIGMIDAGKAYNTANKQFVSGIRELAQSATDDVIESSLSTFAENLQEMINYHTILFDQAQRSIKSQLQTFIR-LRKFKEAKKQFDKVSEEKEAALSKNAQAPRNKAH-----------------EVEEASNILNATRKCFRHIVLDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELQP. 211
7 -13.800PF08397.11; MTSS1_HUMAN/16-237; IRSp53/MIM homology domain  ali follow..  11  1.........................FQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTEIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQME-----KVANQLDKDHAKEYKKARQEIKKKSSDTLKLQ---KKAKKGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTIS... 208
8 -12.900PF10455.9; Q6CPI5_KLULA/40-383; Bin/amphiphysin/Rvs domain for vesicular trafficking  ali follow..  67FNDWWSGNKDSIFSFSKKKAEVSPEVKETAENGLLPRSFAQALSKAATDSALILKQLKAEEPELEAEADEDEDDEDVDNLIKAFESWTKCQLSIDQSKAEMDSLMVKEFNAKLSKLIE--TDFKKGHELRAKV-LNFDTLRHEIKLKLQEKEVVASSEKTNEEPVDMAKTEEDPDSKLFERLEDQFVSATSETVEFLGELTDS--SEIISLVKLFHNFQLIHYKQCVKSLEEDLEV 341
9 -10.200PF13805.6; Q6CC94_YARLI/1-265; Eisosome component PIL1  ali follow..  11  56....................................ARKLAQLVKMEKNVMRSIEQQARERREVAKQLSLWGEDA-DEDVSDVTDKLGVLIYEIGELEDQ--------FIDKYDQYRITLKSVRN----IEASVQPSRDRKQKITDQIAHLKY----KEPNSPKIIVLEQELVRAEAESLVAEAQLSNI--------------TREKVKAAFNYQFDAIREHSEKLA......... 215
10 -9.510PF15984.5; Q8XQX4_RALSO/108-304; Bacterial collagen, middle region  ali follow..  12  1LPLVPSSAQSGLGGVVENLGATVSALGAVQDGLGSIGSNPNPIGTTVASTGNVVTGVGNTVTSAGTLVGGLGTGQLSTPLAGALTQVGQAVTNAGTTLGTTLSTGPVQLSTAIVPLTSQIIGGTQTVGATTGMGTPANSLLGTLGGAIANGSTLTNANVPVVSNVGGVVGAVGNTVASLGGV...................................................... 195

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.