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current user: public |
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Query: PF09325.10; A8WVN0_CAEBR/231-466; Vps5 C terminal like, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . | |||||||
# | Score | Template | Links and tools | %id | First | VKKIFKNFQVVFSKMAFHMEEGDRWFEQVQSQIDELDEALRKLYTVTESLVASRREMATSGELLGKALSMLAACEESTSLSRALSALTDVTESVSNAWGKQAEIDNAKFSEAIYEYIMLISALKDVFGERVRAWQQWQDAQQTLSRKRDQKTKIDLAAGGRNEKSDQLKAEIEETVLRIDQLEQHFGELSKAIREEVARFDTDRKTDMKKILIDYMESMIHTHTEMLQLWEKFEPQ | Last |
1 | -73.000 | PF09325.10; A8WVN0_CAEBR/231-466; Vps5 C terminal like | ali | 100 | 1 | VKKIFKNFQVVFSKMAFHMEEGDRWFEQVQSQIDELDEALRKLYTVTESLVASRREMATSGELLGKALSMLAACEESTSLSRALSALTDVTESVSNAWGKQAEIDNAKFSEAIYEYIMLISALKDVFGERVRAWQQWQDAQQTLSRKRDQKTKIDLAAGGRNEKSDQLKAEIEETVLRIDQLEQHFGELSKAIREEVARFDTDRKTDMKKILIDYMESMIHTHTEMLQLWEKFEPQ | 236 |
2 | -44.400 | PF06730.11; Q9VK91_DROME/1-222; FAM92 protein | ali follow.. | 13 | 4 | ............RGKLSFLNTKDDRVKIINERINITERHLMEMCSSFALVTRKMAKYRDSFDELAKSVKSYADDEENESLCQGLKSFTNAVTIMGDYMDINVHRLEHKIVNELAQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSKFSA-----------------NNSAADSELFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIISDFILIAMKQHTKALEILSASYYD | 211 |
3 | -42.300 | PF10456.9; SNX9_MOUSE/358-593; WASP-binding domain of Sorting nexin protein | ali follow.. | 16 | 34 | .................DLIEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRTGPLPKEYQKIGKALQSLAAVQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGAHKGAIEKVKESDKLVATSKITPQDK-------------------------QTMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSR | 234 |
4 | -22.500 | PF06456.13; ICA1L_MOUSE/15-242; Arfaptin-like domain | ali follow.. | 12 | 5 | MQKNYWRTKQVFIKATGKKEDEDAELDAKLEVFHSIQETCNELVKIVEKYQLRLNVISEEENELGLFLKFQAERDSTQA-GEMMDAAGKALCSSAKQRLALCTPLSRLKQEVATFSQRAISDTLVTINRMERARTEYRGALLWMKDASQELDP----------DTFKQMEKFRKVQNQVRNSKDSFDKLKKDVCQKVDLLGASRCNMLSHSLTTYQRTLLGFWEKTAQMM...... | 228 |
5 | -15.400 | PF03114.18; SH3G3_DROME/6-241; BAR domain | ali follow.. | 11 | 1 | LKKQINKANQYMTEKGAEGTKLDMDFMEMERKTDVTVELVEELQLKTKEFLQKSNTYPQPEGLLAECMLTYGK-EDNSVFAQALVEFGEALKQMADVKYSLDDNIKQNFLEPLHHMQ-------------TKDLKEVMHHRKKLQGRRLDFDCKRRR----------------AKDDEIRGAEDKFGESLQLAQVGMFNLLEND-TEHVSQLVTFAEALYDFHSQCADVLRGLQET | 233 |
6 | -14.900 | PF16746.5; F1Q973_DANRE/5-238; BAR domain of APPL family | ali follow.. | 13 | 17 | .........................IEEVEGDVCELESKLDKLVKLCIGMIDAGKAYNTANKQFVSGIRELAQSATDDVIESSLSTFAENLQEMINYHTILFDQAQRSIKSQLQTFIR-LRKFKEAKKQFDKVSEEKEAALSKNAQAPRNKAH-----------------EVEEASNILNATRKCFRHIVLDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELQP. | 211 |
7 | -13.800 | PF08397.11; MTSS1_HUMAN/16-237; IRSp53/MIM homology domain | ali follow.. | 11 | 1 | .........................FQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTEIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQME-----KVANQLDKDHAKEYKKARQEIKKKSSDTLKLQ---KKAKKGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTIS... | 208 |
8 | -12.900 | PF10455.9; Q6CPI5_KLULA/40-383; Bin/amphiphysin/Rvs domain for vesicular trafficking | ali follow.. | 9 | 67 | FNDWWSGNKDSIFSFSKKKAEVSPEVKETAENGLLPRSFAQALSKAATDSALILKQLKAEEPELEAEADEDEDDEDVDNLIKAFESWTKCQLSIDQSKAEMDSLMVKEFNAKLSKLIE--TDFKKGHELRAKV-LNFDTLRHEIKLKLQEKEVVASSEKTNEEPVDMAKTEEDPDSKLFERLEDQFVSATSETVEFLGELTDS--SEIISLVKLFHNFQLIHYKQCVKSLEEDLEV | 341 |
9 | -10.200 | PF13805.6; Q6CC94_YARLI/1-265; Eisosome component PIL1 | ali follow.. | 11 | 56 | ....................................ARKLAQLVKMEKNVMRSIEQQARERREVAKQLSLWGEDA-DEDVSDVTDKLGVLIYEIGELEDQ--------FIDKYDQYRITLKSVRN----IEASVQPSRDRKQKITDQIAHLKY----KEPNSPKIIVLEQELVRAEAESLVAEAQLSNI--------------TREKVKAAFNYQFDAIREHSEKLA......... | 215 |
10 | -9.510 | PF15984.5; Q8XQX4_RALSO/108-304; Bacterial collagen, middle region | ali follow.. | 12 | 1 | LPLVPSSAQSGLGGVVENLGATVSALGAVQDGLGSIGSNPNPIGTTVASTGNVVTGVGNTVTSAGTLVGGLGTGQLSTPLAGALTQVGQAVTNAGTTLGTTLSTGPVQLSTAIVPLTSQIIGGTQTVGATTGMGTPANSLLGTLGGAIANGSTLTNANVPVVSNVGGVVGAVGNTVASLGGV...................................................... | 195 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |